G1171663


Basic Information

Item Value
gene id G1171663
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 37868589 ~ 37869588 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1336205
tcgtctttttaagcaggagaacttgcacaattggtggctgacaaaatacttttttgccccactgtatatatgtatatgtgtgtgtatttgaagaATGGCAAAAGTCAGGATATTCTTcagcatttgtgaaattattgtGGTTAGGGGAGGATGACAGAAGCTGTAAAGCTTGTTAAGATGATGGAAAAGCGATTTTGTTAGTGGATTTCCTACCCTCTGGCTGGGAAAACGTGAGTCTCGCATTGCTGGACATTCCAATTGAGTTGATAACCAATGACAAAGGCTTTCAGTTTGAGGAATTCCCACTCTCCATTTACTGTACactcagaaaaaaaggtgctaactagaacctaaaagggttatttcgGCTGTCCTCGTAGAACCCATTGAAgaatccttttgggttccaggtagaaacatTTTAATAGAACCCCTTTGGGTTCAAAGTAGAACCCTTTCCAGAGGGCTCTACGTGGAACCCAAAAAGGGCTCTCCTATGGGGGCAGCCGAAGAGTGTCGTTATCCGTATAGGATCTCCATTATGTTTATTTCTGTATGTAACTACAGAACGAAATGTGATGTACCCTCTCACCTGGTTGCTTCCCTGTCCTTGAATGGGTTTTGTGTATATTAGAATTGTATGATGCTTCTGGAGAGTCCTCTTTTCCCCCCGAGTGTAGGGTTTAGAATGTATGCAGTATGGGGCCATGATGAAGGGTTTTGATCAAGTATTAGTCTGTGAGGAAGGTAGGGGTCAGGAACTAGGCACAATATGTGAGTAGCCTACGCGCAACATGTAGTCTATGAGATCTGTTTCCAGGAATTGTCTATTTCCCAGCATTAAGGGCCCAGcgcctcaacctctctctctctctctctctctctctctccccctcttgaaAATGACGGTCCCCACTGTCGCCCATGATGAGCCAGTCGACGCTTGCCTGAGAGATGAATCAAGCACTAGATCAAAAGACTACAAATGTTTGGTctcccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1336205 True 1000 lncRNA 0.44 1 37868589 37869588

Neighbor

gene id symbol gene type direction distance location
LOC110486271 LOC106607308 coding downstream 97442 37748605 ~ 37771147 (-)
LOC110486270 LOC106601037 coding downstream 217439 37647097 ~ 37651150 (-)
LOC110485166 LOC106607305 coding downstream 236978 37628502 ~ 37631611 (-)
LOC110486268 LOC106607304 coding downstream 251330 37609264 ~ 37617259 (-)
LOC110486267 LOC106607302 coding downstream 264061 37588948 ~ 37604528 (-)
LOC110486276 LOC106601043 coding upstream 86 37869674 ~ 37874854 (-)
LOC110485169 LOC106607314 coding upstream 34505 37904093 ~ 37939039 (-)
LOC110486284 LOC106601139 coding upstream 136348 38005936 ~ 38022314 (-)
LOC110486285 LOC106607319 coding upstream 174455 38043339 ~ 38052087 (-)
LOC110486281 LOC106601133 coding upstream 207737 38077325 ~ 38133730 (-)
G1171659 NA non-coding downstream 2784 37865106 ~ 37865805 (-)
G1171644 LOC106601042 non-coding downstream 20896 37846434 ~ 37847693 (-)
G1171533 NA non-coding downstream 69643 37628375 ~ 37798946 (-)
G1171581 NA non-coding downstream 132820 37728466 ~ 37735769 (-)
G1171531 NA non-coding downstream 242236 37626119 ~ 37626353 (-)
G1171671 NA non-coding upstream 30030 37899618 ~ 37899934 (-)
G1171720 LOC106607318 non-coding upstream 159507 38029095 ~ 38034875 (-)
G1171764 NA non-coding upstream 282184 38151772 ~ 38165790 (-)
G1171788 NA non-coding upstream 317597 38187185 ~ 38187485 (-)
G1171337 NA other downstream 669949 37198228 ~ 37198640 (-)
G1171149 NA other downstream 984249 36884018 ~ 36884340 (-)
G1171057 hsp70b other downstream 1040164 36665169 ~ 36828425 (-)
G1171051 NA other downstream 1271948 36595832 ~ 36596641 (-)
G1171050 NA other downstream 1274063 36594054 ~ 36594526 (-)
LOC110486310 LOC106601114 other upstream 1311186 39136920 ~ 39183852 (-)
LOC110486313 snn other upstream 1378564 39248150 ~ 39250310 (-)
LOC110486318 kdm8 other upstream 1458628 39328216 ~ 39331966 (-)
G1173645 NA other upstream 2054334 39923922 ~ 39924959 (-)
G1174658 NA other upstream 2446530 40316118 ~ 40316859 (-)

Expression


Co-expression Network