G1171798


Basic Information

Item Value
gene id G1171798
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 38201589 ~ 38202384 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1336366
ccagtatacattggtttaattatgtcatatgttttaccccctacaccactttcaataactttgtagaacagtcctgtatgccaaatagaatcaaatgctttttggaagtcgataaagcaagcatattttttggtattattttggtggacatgtttatctatcagggtgtgtagggtgtaaatatgatcagttgtgcgatgttttggtataaatccaatttggcttttactcaagacattgtgcttattaaggaagtttagaactcttacatttataatgctacagaaaaccttccccaggttactgttcacacaaatgcctctgtaattgttagggCCAAATTTGTCTCAATTtttaaagattggggttatgagtccttgattccagatgtcagggaaataacctacactcaggatcaaattaaacagttttaatatagccaattgaaattttgcactagtgagtttgagcatctcatttaggatgccatcaggtccgcatgcttttttaaatttgagagcctgaagtttcttatagagctcctggtcagtaattggggagtccaatggattttgattgtcctttatagctttttctAATCGATTCAACTTCTCATGAATTTGGCGTTGTTCTACATTTGTGTCAATTTTAATGGTGTTGTAGAGTGTGTatatgtcaccattttgtatcgTTAATTCCTCTTGTTTAAGTTTTTTTagttttaaagtctcacagtaatgaaggcgtaatcaccattatttgggtctctgtgcttttggttggatagtgttctatg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1336366 True 796 lncRNA 0.35 1 38201589 38202384
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110486281 LOC106601133 coding downstream 67859 38077325 ~ 38133730 (-)
LOC110486285 LOC106607319 coding downstream 149502 38043339 ~ 38052087 (-)
LOC110486284 LOC106601139 coding downstream 179275 38005936 ~ 38022314 (-)
LOC110485169 LOC106607314 coding downstream 262550 37904093 ~ 37939039 (-)
LOC110486276 LOC106601043 coding downstream 326735 37869674 ~ 37874854 (-)
LOC110486288 LOC105013206 coding upstream 89828 38292212 ~ 38303843 (-)
LOC110486290 LOC106601128 coding upstream 125473 38327857 ~ 38365149 (-)
LOC110486294 LOC106607327 coding upstream 188499 38390883 ~ 38399323 (-)
LOC110486295 LOC106607327 coding upstream 208856 38411240 ~ 38420261 (-)
LOC110486297 LOC106601124 coding upstream 287734 38490118 ~ 38551806 (-)
G1171796 NA non-coding downstream 785 38200592 ~ 38200804 (-)
G1171794 NA non-coding downstream 3491 38197895 ~ 38198098 (-)
G1171792 NA non-coding downstream 6223 38195130 ~ 38195366 (-)
G1171791 NA non-coding downstream 6751 38194620 ~ 38194838 (-)
G1171788 NA non-coding downstream 14104 38187185 ~ 38187485 (-)
G1171799 NA non-coding upstream 391 38202775 ~ 38203031 (-)
G1171812 NA non-coding upstream 20606 38222990 ~ 38223221 (-)
G1171832 NA non-coding upstream 51394 38253778 ~ 38253995 (-)
G1171835 NA non-coding upstream 54988 38257372 ~ 38257634 (-)
G1171838 NA non-coding upstream 57096 38259480 ~ 38259808 (-)
G1171337 NA other downstream 1002949 37198228 ~ 37198640 (-)
G1171149 NA other downstream 1317249 36884018 ~ 36884340 (-)
G1171057 hsp70b other downstream 1373164 36665169 ~ 36828425 (-)
G1171051 NA other downstream 1604948 36595832 ~ 36596641 (-)
G1171050 NA other downstream 1607063 36594054 ~ 36594526 (-)
LOC110486310 LOC106601114 other upstream 978390 39136920 ~ 39183852 (-)
LOC110486313 snn other upstream 1045768 39248150 ~ 39250310 (-)
LOC110486318 kdm8 other upstream 1125832 39328216 ~ 39331966 (-)
G1173645 NA other upstream 1721538 39923922 ~ 39924959 (-)
G1174658 NA other upstream 2113734 40316118 ~ 40316859 (-)

Expression

G1171798 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
End of interactive chart.

G1171798 Expression in each Bioproject

Bar chart with 20 bars.
G1171798 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G239285 NA unknown NW_024375770.1 VHII01000033.1 147941 ~ 168575 (-)
mexican tetra (Astyanax mexicanus) G318186 NA non-coding NW_019172881.1 APWO02000078.1 580975 ~ 585213 (-)