XLOC_030722 (zgc:158463)


Basic Information

Item Value
gene id XLOC_030722
gene name zgc:158463
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 824709 ~ 826807 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059842
ATAGGACTCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGCCATGATTGAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACGAAAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCGACCGTAAACGATGCCGACCCGCGATCCGGCGGCGTTATTCCCATGACCCGCCGGGCAGCGTGCGGGAAACCACGAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCCGGCCCGGACACGGAAAGGATTGACAGATTGATAGCTCTTTCTCGATTCTGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTCATTCCGATAACGAACGAGACTCCGGCATGCTAAATAGTTACGCGGCCCCGCGCGGTCGGCGTCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACGCGAGATGGAGCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATGGGCGGATCAACGTGTGCCTACCCTGCGCCGAGAGGCGCGGGTAACCCGTTGAACCCCGCTCGTGATTGGGACTGGGGCTTGAAACTGTTTCCCATCAACGAGGAATTCCCAGTAAGCGCAGGTCATAAGCTTGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGGTCCTCGGATCGGCCCCGCCGGGGCTCCTCGCCGGGCCCTGGCGGAGCGCCGAGAAGACGATCAAACTTGATCCTCTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACGGGTTCGAGAGGGGATCTCCCCCCCGCTCATTCCTCCGCTTCGGGGTCCCTCCGGGGTTACCCCAGGCTCGGAAAACGGTGAACCTGGCGCGGTCGGCGACAGCGAGCTCCCCGACGGGTACCCGCCTGGCCTCTCGGGGCCGTGGGTTCAAAGACCTTCCCGTCTCGACGGGGAGGCGCCCGTCCGGGGCTCTGCCGACcgcccgttttt
>TCONS_00061504
TACCTGGTTGATCCTGCCAGTAACATATGCTTGTCTCAAAGATTAAGCCATGCAGGTCTAAGTGCACACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGATCGCTCCATCCGTTACTTGGATAACTGTGGCAATTCCAGAGCTAATACATGCCAACGAGCGCCGACCCGGTCCCCCCGGGGGCCGGGGACGCGTGCATTTATCAGATCCAAAACCCATCCGGGTGCGGCGTGGGCTCCCCCCTCGGGGGTCGGGCCTCGTCCCCCGGCCGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCGCGCCCTCCGCGGCGGCGACGATTCATTCGAATGTCTGCCCTATCAACTTTCGATGGTACTTTAGGCGCCTACCATGGTGACCACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCATTCCCGACACGGGGAGGTAGTGACGAAAAATAACAATACAGGTCTCTTTCGAGGCCCTGTAATTGGAATGAGCGTATCCTAAACCCATGGGCGAGGACCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGAGTGGGCTGGCGGTCCGCCGCGAGGCGAGCCACCGCCTGTCCCGGACCCTGCCTCCCGGCGCCCCCCGGATGCCCTTAGCTGGGTGTCCGGTACCTCGGGGCCCGGAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGCCCAGCCGCCGCTGAATACCGCAGCTAGGAATAATGGAATAGGACTCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGCCATGATTGAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACGAAAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCGACCGTAAACGATGCCGACCCGCGATCCGGCGGCGTTATTCCCATGACCCGCCGGGCAGCGTGCGGGAAACCACGAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCCGGCCCGGACACGGAAAGGATTGACAGATTGATAGCTCTTTCTCGATTCTGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTCATTCCGATAACGAACGAGACTCCGGCATGCTAAATAGTTACGCGGCCCCGCGCGGTCGGCGTCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACGCGAGATGGAGCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATGGGCGGATCAACGTGTGCCTACCCTGCGCCGAGAGGCGCGGGTAACCCGTTGAACCCCGCTCGTGATTGGGACTGGGGCTTGAAACTGTTTCCCATCAACGAGGAATTCCCAGTAAGCGCAGGTCATAAGCTTGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGGTCCTCGGATCGGCCCCGCCGGGGCTCCTCGCCGGGCCCTGGCGGAGCGCCGAGAAGACGATCAAACTTGATCCTCTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACGGGTTCGAGAGGGGATCTCCCCCCCGCTCATTCCTCCGCTTCGGGGTCCCTCCGGGGTTACCCCAGGCTCGGAAAACGGTGAACCTGGCGCGGTCGGCGACAGCGAGCTCCCCGACGGGTACCCGCCTGGCCTCTCGGGGCCGTGGGTTCAAAGACCTTCCCGTCTCGACGGGGAGGCGCCCGTCCGGGGCTCTGCCGACcgcccgttttt

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070410-9 No description available

Ensembl:

ensembl_id ENSDARG00000089382

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059842 False 1212 mRNA 0.59 1 824709 825920
TCONS_00061504 True 2099 lncRNA 0.58 1 824709 826807

Neighbor

gene id symbol gene type direction distance location
XLOC_030721 BX537263.1 coding downstream 2423 821952 ~ 822286 (-)
XLOC_030720 CU855580.1 coding downstream 336734 487859 ~ 487975 (-)
XLOC_030719 LO017838.1 coding downstream 362474 462121 ~ 462235 (-)
XLOC_030718 NA coding downstream 374096 446396 ~ 450613 (-)
XLOC_030717 NA coding downstream 424983 398305 ~ 399726 (-)
XLOC_030723 BX537263.2 coding upstream 6792 833599 ~ 833933 (-)
XLOC_030724 BX537263.4 coding upstream 9330 836137 ~ 836290 (-)
XLOC_030725 NA coding upstream 94681 921488 ~ 926077 (-)
XLOC_030726 FP102032.1 coding upstream 171005 997812 ~ 997928 (-)
XLOC_030727 mbd2 coding upstream 171489 998296 ~ 1047504 (-)
XLOC_030728 NA non-coding upstream 179643 1006450 ~ 1084749 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G147380 NA non-coding CM030141.1 CM030141.1 828455 ~ 1174302 (+)