G1172035 (LOC108238713)


Basic Information

Item Value
gene id G1172035
gene name LOC108238713
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 38611053 ~ 38618004 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1336614
tcagaaatgtcggtgctctcatccacagccaaggaatatgcaataaaatcttttccctttttcacaagctgctcttttagattgatggacaactggtctactctctcggcaatggtgtttctgctcagactcacatttaaaaagagttgccttttttctgggcaaacttcgtcacaaactttaatcatgcagtttttgatgaaatccccctccgtaaatggccgggctatttagcgatctcttctgccaaaataaaactggccttgacagcagcctggccttgtgatttggcttttttgaacagagcctgtcgagatttgaggcctcgttttaattcctctgccttttgtagcctttgttccatgtccatattcttgtttttgtccgcgtgtttcgtttcataatgtcgtctcagattatactctttcagtaccgccacactttctccacacagaagacacacaggttttccagctaccttcgtgaacatatactccgactcccaccttgtttgaaacccccggttctcagtatccaccttccgttttgccatttttgatgggtatctgaaagttaattttactgtgatgctgacgactgctgtgccaataaatattgaaatgaagcagcctactgctcggtgcgtcacctttgcattgtgggaaatgtagtattggtgcgtgtaaaagatctgcgggctgccggcttgctgcgggccggttctaataataaatcaagatcatcccaggggc

Function

NR:

description
PREDICTED: general transcription factor II-I repeat domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1336614 True 752 lncRNA 0.44 2 38611053 38618004

Neighbor

gene id symbol gene type direction distance location
LOC110486299 nudt1 coding downstream 31745 38577130 ~ 38579308 (-)
LOC110486297 LOC106601124 coding downstream 59247 38490118 ~ 38551806 (-)
LOC110486295 LOC106607327 coding downstream 190792 38411240 ~ 38420261 (-)
LOC110486294 LOC106607327 coding downstream 211730 38390883 ~ 38399323 (-)
LOC110486290 LOC106601128 coding downstream 245904 38327857 ~ 38365149 (-)
LOC110486300 elfn1 coding upstream 94697 38712701 ~ 38807558 (-)
LOC110486304 LOC106607337 coding upstream 297123 38915127 ~ 38928959 (-)
LOC110486307 LOC106601117 coding upstream 447160 39065164 ~ 39071223 (-)
LOC110486310 LOC106601114 coding upstream 518916 39136920 ~ 39183852 (-)
LOC110486311 LOC106601151 coding upstream 602075 39220079 ~ 39223322 (-)
G1172027 NA non-coding downstream 9765 38601053 ~ 38601288 (-)
G1172026 NA non-coding downstream 10124 38600478 ~ 38600929 (-)
G1172025 NA non-coding downstream 10619 38599792 ~ 38600434 (-)
G1172024 NA non-coding downstream 11384 38599251 ~ 38599669 (-)
G1172017 NA non-coding downstream 15545 38595300 ~ 38595508 (-)
G1172039 NA non-coding upstream 5322 38623326 ~ 38623602 (-)
G1172042 NA non-coding upstream 7909 38625913 ~ 38626150 (-)
G1172045 NA non-coding upstream 9659 38627663 ~ 38628417 (-)
G1172062 NA non-coding upstream 46353 38664357 ~ 38691004 (-)
G1172177 NA non-coding upstream 111011 38729015 ~ 38729357 (-)
G1171337 NA other downstream 1412413 37198228 ~ 37198640 (-)
G1171149 NA other downstream 1726713 36884018 ~ 36884340 (-)
G1171057 hsp70b other downstream 1782628 36665169 ~ 36828425 (-)
G1171051 NA other downstream 2014412 36595832 ~ 36596641 (-)
G1171050 NA other downstream 2016527 36594054 ~ 36594526 (-)
LOC110486313 snn other upstream 630148 39248150 ~ 39250310 (-)
LOC110486318 kdm8 other upstream 710212 39328216 ~ 39331966 (-)
G1173645 NA other upstream 1305918 39923922 ~ 39924959 (-)
G1174658 NA other upstream 1698114 40316118 ~ 40316859 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001281 NA non-coding NC_007112.7 CM002885.2 28708179 ~ 28709951 (-)