G1172045


Basic Information

Item Value
gene id G1172045
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 38627663 ~ 38628417 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1336624
TTTATAGGGAGCAGATGTGGGGATGAATCCTTAACTGACATCCTCATGTCCTCCATCCGCCATGATGTCACTCTGGCATAAGAATAAAGGGAGCCAAGTACTAAGTGTTGACCTCTCTCAGTAACAACATGTACTAAGTGTTGACCTCTCTCAGTAACAACATGTACTAAGTGTTGACCTCTCTCAGTAACAACATGTACTAAGTGTTGACCTCTCTCAGTAACAACACATTCCCCGACCACAACAGCTCTCTCATCAACCTGTACAAAATAATGGACAAATACAGACCTAATTTCTCTGCAACACATTATTATTCTGTAAAACACATTTCCTTAATGTTTCCAGGAACATGACAATATCTCCAACCCTGAAGGAAAGGCATAGACAGTTTTACAGATGGTTCAATAGCCATGTAACAGAGGGGATTGGTGGTGTTAAAATGCATCCATATTAACATTCTGGCTTCTGTACATCCTTCTTTGAGGCATAGAATCTATTTTCTATTCTGTAGCTTTCTCACAGGCACAGCACAACATACTTGTAAATGCATTATCCTGCCAACAACAATAACATGCAAGATGGGAACATTATACACCAGGCCAACAGCCTAAATTCTTGTGCTGACTCACTGTCTATTAACACCTTCTAGGTACTAAACCTCTTTTTACACCTAGTTAGTACTGGACCATTTGGAATCGACAGCGATTGGGCAATAGTTGCTGCATTCTCAAACTATATTCAGCtaaaattataat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1336624 True 755 lncRNA 0.40 1 38627663 38628417

Neighbor

gene id symbol gene type direction distance location
LOC110486299 nudt1 coding downstream 48355 38577130 ~ 38579308 (-)
LOC110486297 LOC106601124 coding downstream 75857 38490118 ~ 38551806 (-)
LOC110486295 LOC106607327 coding downstream 207402 38411240 ~ 38420261 (-)
LOC110486294 LOC106607327 coding downstream 228340 38390883 ~ 38399323 (-)
LOC110486290 LOC106601128 coding downstream 262514 38327857 ~ 38365149 (-)
LOC110486300 elfn1 coding upstream 84284 38712701 ~ 38807558 (-)
LOC110486304 LOC106607337 coding upstream 286710 38915127 ~ 38928959 (-)
LOC110486307 LOC106601117 coding upstream 436747 39065164 ~ 39071223 (-)
LOC110486310 LOC106601114 coding upstream 508503 39136920 ~ 39183852 (-)
LOC110486311 LOC106601151 coding upstream 591662 39220079 ~ 39223322 (-)
G1172042 NA non-coding downstream 1513 38625913 ~ 38626150 (-)
G1172039 NA non-coding downstream 4061 38623326 ~ 38623602 (-)
G1172035 LOC108238713 non-coding downstream 9659 38611053 ~ 38618004 (-)
G1172027 NA non-coding downstream 26375 38601053 ~ 38601288 (-)
G1172026 NA non-coding downstream 26734 38600478 ~ 38600929 (-)
G1172062 NA non-coding upstream 35940 38664357 ~ 38691004 (-)
G1172177 NA non-coding upstream 100598 38729015 ~ 38729357 (-)
G1172230 NA non-coding upstream 168901 38797318 ~ 38797546 (-)
G1172240 NA non-coding upstream 181962 38810379 ~ 38810761 (-)
G1172361 NA non-coding upstream 189584 38818001 ~ 38818645 (-)
G1171337 NA other downstream 1429023 37198228 ~ 37198640 (-)
G1171149 NA other downstream 1743323 36884018 ~ 36884340 (-)
G1171057 hsp70b other downstream 1799238 36665169 ~ 36828425 (-)
G1171051 NA other downstream 2031022 36595832 ~ 36596641 (-)
G1171050 NA other downstream 2033137 36594054 ~ 36594526 (-)
LOC110486313 snn other upstream 619735 39248150 ~ 39250310 (-)
LOC110486318 kdm8 other upstream 699799 39328216 ~ 39331966 (-)
G1173645 NA other upstream 1295505 39923922 ~ 39924959 (-)
G1174658 NA other upstream 1687701 40316118 ~ 40316859 (-)

Expression


Co-expression Network