G1172292


Basic Information

Item Value
gene id G1172292
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 38861710 ~ 38895292 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1336886
ctataatgaaaattacaggcctctctcatctttttaagtgggagaacttgcacaattggtggctgactaaatacttttttgccccactgtaagtgtttccagtttcagagatttttgtagtttgttccagtcattggcagcagagaactggaaggagaattggttttgggggtgaccagagagatatacctgctggagcgcgtgctacagatgggtgctgctatggtgatcagcgagctgagataagggggactttacctagcagggtcttgtagccagtgggtttggcgacgagtatgaagcgagggccaggcaACGAGAGTGtgcaggtcacagtggtgggtagtatatggggctttggtgacaaaacggatggcactgtgatagactgcgtccaatttattgagtagggtattggaggctattttgtaaattacatcaccgaagtcgaggatcggtaggatggtcagttttacgagggtatgtttggcagcatgagtgaaggatgctttgttgcgatataggaatccaattctagatttaactttggattggagatgtttgatgtgagtctggaaggagagtttacagtctaaccagacacctaggtatttgtagttgtccacatattctaagtccgaactgtccagagtagtgatgttggacgggcgggcaggtgcaggcagcgatcggttgaagagcatgcatttagttttacttgtatttaagagcaattggaagccacggaaggagagttgtatggcattgaatctcgcctggagggttgttaacacagtccaaagaagggccagaagtatattgaatggtgtcgtttgcgtagaggtggatcagagactcaccagcagcaagagcgacatcattgatgtatacagagaagagagtcggtccaagaattgaaccctgtggcacccccatagagactgccagaggcccggacaacatgccctcccatttgacacaatgaactctatcagagaagtagttggtgaaccaggcgaggcaatcatttgagaaaccaaggccatCGAgtctgcagatgaggatgtggtgattgacagagtcgaaagccttggccaggtcaatgaatacggctaggaccttgagcgtggctgaggtgcacccatgaccagctctgaaaccagattgcatagcggagaaggtatgctGGGATTCGAAATGggcggtgatctgtttgttaacttggctttcgaagaccttagaaaggcagggtaggatagaaataggtctgtagcagtttgggtcaagagtgcctcccccctttgaagagggggatgaccgcagctgctttccaatctttgggaatctcagacgacacgagaggttgaacaggctagtaatagggttgcaacaatttcggcagatcaattttagaaagagagggtccagattatctagcccggctgatttgtaggggtccagattttgcagctctttcagaacatcagctgactggatttgggagaaggataaatggggaaggcttgggcgagttgcagTGGGGGGTACAGTGCTGTGGACCGGGGTAGTggtaaccaggtggaaagcatggccagctgtagaaaaatgcttattgaaaatctcaattatagtggatttatcggtggtgacagagtttcctatcctcagtgcagtgggcagctgggaggaggtgttcttattctccatggacttaacagtgtcccagaacttttttgagtttgtgttgcaggaagcaaatttctgcttgaaaaagctagccttggcttttctaactgcctgtgtatattggtttctaacttccctgaaaagttgcatatcacgggggctgttcgatgctaatgcccaacgccataggatgtttttgtgttggttaagggcagtcagg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1336886 True 1906 lncRNA 0.47 2 38861710 38895292

Neighbor

gene id symbol gene type direction distance location
rrmj2 rrmj2 coding upstream 274713 38579499 ~ 38586997 (+)
LOC110486298 LOC106607331 coding upstream 288647 38554081 ~ 38573063 (+)
LOC110486296 LOC106607332 coding upstream 379605 38474403 ~ 38482105 (+)
LOC118938588 NA coding upstream 438731 38422896 ~ 38422979 (+)
LOC118938584 NA coding upstream 439198 38422430 ~ 38422512 (+)
LOC110486305 LOC106607338 coding downstream 38811 38934103 ~ 38962100 (+)
LOC110487539 LOC106607115 coding downstream 72226 38967518 ~ 38970243 (+)
LOC110486306 LOC106601118 coding downstream 79998 38975290 ~ 38990960 (+)
LOC110486308 zfn2b coding downstream 188189 39083481 ~ 39092678 (+)
LOC110486309 LOC106601153 coding downstream 215920 39073946 ~ 39123055 (+)
G1172288 NA non-coding upstream 3160 38858163 ~ 38858550 (+)
G1172282 NA non-coding upstream 9260 38852247 ~ 38852450 (+)
G1172278 NA non-coding upstream 14712 38846775 ~ 38846998 (+)
G1172273 NA non-coding upstream 22702 38838666 ~ 38839008 (+)
G1172261 NA non-coding upstream 35423 38826027 ~ 38826287 (+)
G1172353 NA non-coding downstream 106378 39001670 ~ 39001873 (+)
G1172553 NA non-coding downstream 166585 39061877 ~ 39063105 (+)
G1172647 NA non-coding downstream 229272 39124564 ~ 39124878 (+)
G1172648 NA non-coding downstream 230180 39125472 ~ 39125717 (+)
G1170455 NA other upstream 271003 38589772 ~ 38590707 (+)
G1170322 NA other upstream 598857 38262414 ~ 38262853 (+)
G1170288 NA other upstream 652189 38209235 ~ 38209521 (+)
G1170195 NA other upstream 839189 38021849 ~ 38022521 (+)
LOC110485168 LOC106601036 other upstream 1216914 37638974 ~ 37646678 (+)
G1172996 NA other downstream 578166 39473458 ~ 39473779 (+)
G1173715 LOC106601095 other downstream 1185182 40080474 ~ 40200482 (+)
polr3k rpc11 other downstream 1459050 40354342 ~ 40357833 (+)
G1174211 NA other downstream 2010239 40905531 ~ 40906473 (+)
G1174245 LOC106607208 other downstream 2106591 41001883 ~ 41003024 (+)

Expression


Co-expression Network