G1174462


Basic Information

Item Value
gene id G1174462
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 40049018 ~ 40050749 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1339338
TTTATTAAAACATAGAAAAGCCTATTGATATGAATGAAATATGAACACAACAGTTGTTAGAGCCATTTTGTATGTGAAAAGAAAATATGTTAAAGTTATTATTCATAGTATGGAAACTGTTTATATGGAAATATAATGGTTAAAACGAAGATGTGTCAGTGGAACCCATAGAGGTAGAAAGAGGACTCTGGATGGATAGAACCTGTTTCAGCATGAACATTACCATTGAGGGCGTtcgccattttaaagtagtcaactgtttgggacttcctatgggttaaattaaggaaggatcacataattccatccaggtaatcaggagggatcagccaaggAAATATTACTCCTGAGGAAACATTCCagaactgcaggtggcagtaaatcaccaaccttggctttatacctgttcagacaacacactccaggtggcagtatgcacctTTTTAGTTTGTTTACTGACTCATAAAAGTAGAATAAGAAGAAATGGACTACTTTAAAAGTAACTGTCCAATATTAATGcgagtagaccgctgattggccagctcatcctcctcaggaGGATGTCATCAACCTCTATGAgaaaatagcaagcatttttttCTGTTTGAGGTTGGGATTTTTAAGTGTTTTTTCTCCCATTTCTGCTTTGGCCACAAAAAGAGTATAGGATGagccaacaacattatttgggtatgagttatcAGAACATTACAATTTTAAAAGTGAGATtatcactggacagttactttaaaattGAGATACCCCTCAATTGCACTGCCCATCCTGTCTCAGAAGCTATTATAGCACAGATACAATGATGAGCCTTCTTTATACCTCTATGGTGGAACCGAATTTAGAACGGGATAGAAGCCCGCTAGAAAAATGCCTTCCAAAAACTAGAGTGGTTAATACTGTTTCAGCTGTTTCATTAATACCTTTGGATAAATTAAATGGGATTTTTGTTGCAACCAAGACATTATCTCATGCCCTTTCTTGGACACCTTCTTGGGACCTTCTCTGTATGGTGTCTAAGGACGTGGCTTATTAGAATGTTGGGACATTGTTTGAAGCCACAACAACAGTGTTTGTTGTTAGTAGTTTGTTCTGTCAGTAATGACAACATCTCTATATTAGGTTAAGTAAAGCATGCATACAAAATAGCATTtgattaaatgcagaagacacataatcggttgaatgcattcagttttgcgactaactaggtatcccctttccctttcctttcgcTTTCGGTATTTCAGGGAAATACAGACAGGTAAGAACTGTACAAGTACAGTACAATTAAAAGGGCTGTGTAGCTACAGTATTTAATGCAAGTGAAGTGTAGCCTTGATTGATAAAgtgtaaaaatgtaaataatgCATGCAACTCTGAAGACAACGATGATAGGAATACATTGCATAGAGTTTGTGAGGGTCTGAGTGTCAAGACTTCTGTCGCCTTATCCCTTGGACGAAGACGGGCATAGTACTCTGCTGCCCCGTAGAGTAACTCCTAAGAGAAAGGCTTCACAATTTTCATTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1339338 True 1546 lncRNA 0.38 2 40049018 40050749

Neighbor

gene id symbol gene type direction distance location
LOC110486323 LOC106607351 coding downstream 288845 39739422 ~ 39760173 (-)
LOC110486320 LOC106607349 coding downstream 433908 39526773 ~ 39615110 (-)
LOC110486318 kdm8 coding downstream 717052 39328216 ~ 39331966 (-)
LOC118936372 il21r coding downstream 726580 39315322 ~ 39322438 (-)
il21r il21r coding downstream 742620 39300023 ~ 39306398 (-)
LOC110486334 LOC106607235 coding upstream 32920 40083669 ~ 40096704 (-)
igfals LOC106601095 coding upstream 46220 40096969 ~ 40099584 (-)
shisa9b LOC106607398 coding upstream 137237 40187986 ~ 40216345 (-)
LOC110486342 LOC106607365 coding upstream 298038 40348787 ~ 40351985 (-)
snrnp25 LOC106601091 coding upstream 301344 40352093 ~ 40354570 (-)
G1174463 LOC106601099 non-coding downstream 1829 40044994 ~ 40047189 (-)
G1173697 NA non-coding downstream 68163 39980011 ~ 39980855 (-)
G1173681 NA non-coding downstream 78248 39970517 ~ 39970770 (-)
G1173675 NA non-coding downstream 80800 39967893 ~ 39968218 (-)
G1173648 NA non-coding downstream 118458 39930301 ~ 39930560 (-)
G1174477 NA non-coding upstream 2405 40053154 ~ 40053661 (-)
G1174478 NA non-coding upstream 3357 40054106 ~ 40054431 (-)
G1174484 NA non-coding upstream 12091 40062840 ~ 40063209 (-)
G1174626 NA non-coding upstream 217370 40268119 ~ 40268449 (-)
G1174628 NA non-coding upstream 218372 40269121 ~ 40269322 (-)
G1173645 NA other downstream 124059 39923922 ~ 39924959 (-)
LOC110486313 snn other downstream 798708 39248150 ~ 39250310 (-)
LOC110486310 LOC106601114 other downstream 867824 39136920 ~ 39183852 (-)
G1171337 NA other downstream 2850378 37198228 ~ 37198640 (-)
G1174658 NA other upstream 265369 40316118 ~ 40316859 (-)
G1174741 NA other upstream 406146 40456895 ~ 40457681 (-)
LOC110486364 LOC106601288 other upstream 783154 40831402 ~ 40843483 (-)
col5a3a LOC106607203 other upstream 1234033 41282052 ~ 41362985 (-)
G1175904 LOC106607178 other upstream 1946565 41997314 ~ 41997637 (-)

Expression


Co-expression Network