Gene
RNA
| Item | Value |
|---|---|
| gene id | G1174626 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048577.1 |
| NCBI id | CM023231.2 |
| chromosome length | 73332040 |
| location | 40268119 ~ 40268449 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Retrotransposable element Tf2 protein type 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1339505 | True | 331 | lncRNA | 0.55 | 1 | 40268119 | 40268449 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| shisa9b | LOC106607398 | coding | downstream | 51774 | 40187986 ~ 40216345 (-) |
| igfals | LOC106601095 | coding | downstream | 168535 | 40096969 ~ 40099584 (-) |
| LOC110486334 | LOC106607235 | coding | downstream | 171415 | 40083669 ~ 40096704 (-) |
| LOC110486323 | LOC106607351 | coding | downstream | 507946 | 39739422 ~ 39760173 (-) |
| LOC110486320 | LOC106607349 | coding | downstream | 653009 | 39526773 ~ 39615110 (-) |
| LOC110486342 | LOC106607365 | coding | upstream | 80338 | 40348787 ~ 40351985 (-) |
| snrnp25 | LOC106601091 | coding | upstream | 83644 | 40352093 ~ 40354570 (-) |
| LOC110486343 | LOC106607364 | coding | upstream | 91346 | 40359795 ~ 40370035 (-) |
| LOC110486345 | f100a | coding | upstream | 120495 | 40388944 ~ 40397229 (-) |
| LOC110486347 | LOC106601085 | coding | upstream | 170889 | 40439338 ~ 40484785 (-) |
| G1174484 | NA | non-coding | downstream | 204910 | 40062840 ~ 40063209 (-) |
| G1174478 | NA | non-coding | downstream | 213688 | 40054106 ~ 40054431 (-) |
| G1174477 | NA | non-coding | downstream | 214458 | 40053154 ~ 40053661 (-) |
| G1174462 | NA | non-coding | downstream | 217370 | 40049018 ~ 40050749 (-) |
| G1174463 | LOC106601099 | non-coding | downstream | 220930 | 40044994 ~ 40047189 (-) |
| G1174628 | NA | non-coding | upstream | 672 | 40269121 ~ 40269322 (-) |
| G1174633 | NA | non-coding | upstream | 11331 | 40279780 ~ 40280137 (-) |
| G1174648 | NA | non-coding | upstream | 33315 | 40301764 ~ 40301985 (-) |
| G1174650 | NA | non-coding | upstream | 34451 | 40302900 ~ 40303103 (-) |
| G1174661 | NA | non-coding | upstream | 51476 | 40319925 ~ 40320135 (-) |
| G1173645 | NA | other | downstream | 343160 | 39923922 ~ 39924959 (-) |
| LOC110486318 | kdm8 | other | downstream | 936880 | 39328216 ~ 39331966 (-) |
| LOC110486313 | snn | other | downstream | 1017809 | 39248150 ~ 39250310 (-) |
| LOC110486310 | LOC106601114 | other | downstream | 1086925 | 39136920 ~ 39183852 (-) |
| G1171337 | NA | other | downstream | 3069479 | 37198228 ~ 37198640 (-) |
| G1174658 | NA | other | upstream | 47669 | 40316118 ~ 40316859 (-) |
| G1174741 | NA | other | upstream | 188446 | 40456895 ~ 40457681 (-) |
| LOC110486364 | LOC106601288 | other | upstream | 565454 | 40831402 ~ 40843483 (-) |
| col5a3a | LOC106607203 | other | upstream | 1016333 | 41282052 ~ 41362985 (-) |
| G1175904 | LOC106607178 | other | upstream | 1728865 | 41997314 ~ 41997637 (-) |
