G1173878


Basic Information

Item Value
gene id G1173878
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 40279757 ~ 40280046 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1338658
CTGTCTTCATCAGAATCTAGAGGCTGTGATGCAGGCTGGTGTCTCCTCGTTTTCTGACTTTTGTCCACTTTGGTCATTTCTGGTTGTGTCTCAAAAGGTAAGTGGTCACAGGACATGAGCAGGTTTCTGTGCAGGACCCTGGAGCGTCCCCTACCCTTTTCTGGTCTCAATTCATAAATCGGCAGGTCTGAACCCATTTGTCTCACCACTGTGTGAATTGTATCTTCCCAATAGTTACGGAGTTTTCCTGGTCCTCCTCTTGGTGTCAGGTTTTTAATCAGAACTCGCTC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106097537

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1338658 True 290 lncRNA 0.47 1 40279757 40280046

Neighbor

gene id symbol gene type direction distance location
LOC118938286 LOC106585892 coding upstream 5898 40270524 ~ 40273859 (+)
LOC110486337 NA coding upstream 123536 40095953 ~ 40156221 (+)
LOC110486335 LOC106607360 coding upstream 194262 40068600 ~ 40085495 (+)
LOC110485171 LOC100380767 coding upstream 228992 39993278 ~ 40050765 (+)
gper1 LOC106607359 coding upstream 297611 39973210 ~ 39982146 (+)
LOC110485173 LOC106601093 coding downstream 22487 40302533 ~ 40348028 (+)
polr3k rpc11 coding downstream 74404 40354342 ~ 40357833 (+)
LOC110486339 LOC106607363 coding downstream 117215 40397261 ~ 40406809 (+)
LOC110486346 LOC106601143 coding downstream 130632 40410678 ~ 40413435 (+)
aanat-2 aanat-2 coding downstream 156190 40436236 ~ 40438857 (+)
G1173876 NA non-coding upstream 10435 40269121 ~ 40269322 (+)
G1173715 LOC106601095 non-coding upstream 79275 40080474 ~ 40200482 (+)
G1173771 NA non-coding upstream 171665 40106950 ~ 40108092 (+)
G1173753 NA non-coding upstream 214075 40065414 ~ 40065682 (+)
G1173751 NA non-coding upstream 216244 40063294 ~ 40063513 (+)
G1173885 NA non-coding downstream 7510 40287556 ~ 40287772 (+)
G1173870 NA non-coding downstream 27616 40307662 ~ 40308188 (+)
G1173902 NA non-coding downstream 28983 40309029 ~ 40309264 (+)
G1173910 NA non-coding downstream 50623 40330669 ~ 40330930 (+)
G1172996 NA other upstream 805978 39473458 ~ 39473779 (+)
LOC110486302 LOC106607335 other upstream 1401378 38876161 ~ 38878379 (+)
G1170455 NA other upstream 1689050 38589772 ~ 38590707 (+)
G1170322 NA other upstream 2016904 38262414 ~ 38262853 (+)
G1174211 NA other downstream 625485 40905531 ~ 40906473 (+)
G1174245 LOC106607208 other downstream 721837 41001883 ~ 41003024 (+)
LOC110486375 LOC106601281 other downstream 775406 41055429 ~ 41065432 (+)
G1175164 NA other downstream 1259445 41539491 ~ 41540680 (+)

Expression


Co-expression Network