G1173895


Basic Information

Item Value
gene id G1173895
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 40348125 ~ 40349355 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1338675
ATTTTActatgactgtctgggagtggtctgagtagggagggggaaactgaaaactagctgatgttggcagaggtttggaactctttcttattggtctattaactaatttaccacctggcaaaccaaaactccatcccacgtaaacaggctgaaatttcaggcggccTTTTTAAACAGCTCTAAAGActgaaagggcattatcatcattttcacagtattattccaacctcatagtgctgaaacacacagagtacaaaacacctgctctttccaggtgaatccaggtgaaaactatgatctcttattgatgtctcctgttaaatccacttcaatcagtgtagatgaaggggaggagacaggttaaagaaggattttttaaaaatccttgtgacaattgagacatggattgtgtatgtgtgccattcagagggtgaatgggcaagacaaaagattgaagtgcctttgaacaaggtatggtagtaggcgccaggcacaccggtttgagtgtgtcaataactgcaaagctgctgggtttttcacgctcaaccgttttccgtgtgtatcaagaatggtccaccacccaaagaacatccagccaacttgacacaactgtgagaagcattggggtcaacatgggccagcatccctgtggaacacttcaacaccttgtagtccatgcgccgacgaattgaggctgttttgggGGAAaaggagggtgcaactcaatgttaggaagctgttcctaatgttttgtacactcaagtgTATATAACACAGGGAACTCTAAATGTTTTTGAATGCACAGGGCCTTTAAGAGCCTCAATGTCACACATTTCTGTTAGAAAAACAAAGCAGTTTACACTGTGAGTGGATAAAAATGGGTAGCTAATCAAAAAAACATTGCCTGCTCCTGATTGGTCTTTGTGTACAACTTTGTTTTTATCTGAGCATCAGTGCCCCATTGATCATGTGTCCAAACTACAGAAAGGGAGAATGAGCTGGAATCAGAAGTCATTTTATTTGTACTATACTAGTATAGCCCCTTCCCTTGCAATAGTGTATTGATACATAGTATGCCATACATTTTGCACATTGTGTATATATTTTGTCAtgcattttatttaattttttacaaaCGTAGCACATGAGCTCTTTTCGTACATTTTATACAAACGTAGCACATCTAAGCTCTTTTGTATTAAGACTGTttggtgtatacagtatgtgttct

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1338675 True 1231 lncRNA 0.41 1 40348125 40349355

Neighbor

gene id symbol gene type direction distance location
LOC110485173 LOC106601093 coding upstream 97 40302533 ~ 40348028 (+)
LOC118938286 LOC106585892 coding upstream 74266 40270524 ~ 40273859 (+)
LOC110486337 NA coding upstream 191904 40095953 ~ 40156221 (+)
LOC110486335 LOC106607360 coding upstream 262630 40068600 ~ 40085495 (+)
LOC110485171 LOC100380767 coding upstream 297360 39993278 ~ 40050765 (+)
polr3k rpc11 coding downstream 5095 40354342 ~ 40357833 (+)
LOC110486339 LOC106607363 coding downstream 47906 40397261 ~ 40406809 (+)
LOC110486346 LOC106601143 coding downstream 61323 40410678 ~ 40413435 (+)
aanat-2 aanat-2 coding downstream 86881 40436236 ~ 40438857 (+)
LOC110486349 LOC106607370 coding downstream 156962 40506317 ~ 40507829 (+)
G1173910 NA non-coding upstream 17195 40330669 ~ 40330930 (+)
G1173902 NA non-coding upstream 38861 40309029 ~ 40309264 (+)
G1173870 NA non-coding upstream 39937 40307662 ~ 40308188 (+)
G1173885 NA non-coding upstream 60353 40287556 ~ 40287772 (+)
G1173914 NA non-coding downstream 1235 40350590 ~ 40351021 (+)
G1173939 NA non-coding downstream 37556 40386911 ~ 40387213 (+)
G1173940 LOC106572245 non-coding downstream 59233 40408588 ~ 40408824 (+)
G1173959 NA non-coding downstream 83040 40432395 ~ 40433138 (+)
G1173715 LOC106601095 other upstream 191946 40080474 ~ 40200482 (+)
G1172996 NA other upstream 874346 39473458 ~ 39473779 (+)
LOC110486302 LOC106607335 other upstream 1469746 38876161 ~ 38878379 (+)
G1170455 NA other upstream 1757418 38589772 ~ 38590707 (+)
G1170322 NA other upstream 2085272 38262414 ~ 38262853 (+)
G1174211 NA other downstream 556176 40905531 ~ 40906473 (+)
G1174245 LOC106607208 other downstream 652528 41001883 ~ 41003024 (+)
LOC110486375 LOC106601281 other downstream 706097 41055429 ~ 41065432 (+)
G1175164 NA other downstream 1190136 41539491 ~ 41540680 (+)

Expression


Co-expression Network