G1173986



Basic Information


Item Value
gene id G1173986
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 40576218 ~ 40577203 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1338795
TGCCATCAGTAAAATTGCAGGAGAACGTTTTCCATAAAAAACAATACTTCAAAACGATAAAtgctttaaatgtattttattattttcaataTGTGTAGCTATGGCACCGCTTCCAGCCTAACAGACTGGAGTTGGAGTGTCATCTCTCTTCCATATTGATGCTGTCGAGTGATGCTCTAGTGGTACTGTCTGCCAAGAGCGGACACAACGACAGCCAGGAACTTCTGGAAGGCTTCCTGAGTATCAGCACTGAAAACGGCGGGACCGAGCTTGGCGGCCACGCACACGGTGATGCAGTCGGCAAGGAGCTGAAGTTGTCGGGATCCACGTGCAGTTTCTCGGAGTGCATCACACTCAGTGTAGTATAGGTGTTCTTGATGTCATCCAGGTTCTGCACAGCTCTGTCCAGTCCGTGCATCACGGTCTTTCCGTGCTTGGCCACGGCGGGGTTACCCATGATGGCAGCGGGTGTGGACAGGTTGCCGAAGGTGCTGAAGTGTCTCTGAGTCCATGGAGACACGATCAGAagTGGCCAGGGCCTGGGGTCCGATCTCATCCACGCTGATCTTTCCCCACAGGCCTACGATGGCACTGCGCTCAGCATCTGTCCAGTCGACCATGTTGACGTTTGTTTGTTGATTTCCGTTGGTACTTGCAAAATGTTACAAGGGATCCCTGA
>TU1338796
TGCCATCAGTAAAATTGCAGGAGAACGTTTTCCATAAAAAACAATACTTCAAAACGATAAAtgctttaaatgtattttattattttcaataTGTGTAGCTATGGCACCGCTTCCAGCCTAACAGACTGGAGTTGGAGTGTCATCTCTCTTCCATATTGATGCTGTCGAGTGATGCTCTAGTGGTACTGTCTGCCAAGAGCGGACACAACGACAGCCAGGAACTTCTGGAAGGCTTCCTGAGTATCAGCACTGAAAACGGCGGGACCGAGCTTGGTACTTGCAAAATGTTACAAGGGATCCCTGA
>TU1338797
TGCCATCAGTAAAATTGCAGGAGAACGTTTTCCATAAAAAACAATACTTCAAAACGATAAAtgctttaaatgtattttattattttcaataTGTGTAGCTATGGCACCGCTTCCAGCCTAACAGACTGGAGTTGGAGTGTCATCTCTCTTCCATATTGATGCTGTCGAGTGATGCTCTAGTGGTACTGTCTGCCAAGAGCGGACACAACGACAGCCAGGAACTTCTGGAAGGCTTCCTGAGTATCAGCACTGAAAACGGCGGGACCGAGCTTGGCGGCCACGCACACGGTGATGCAGTCGGCAAGGCCTGAAGTTGTCGGGATCCACGTGCAGTTTCTCGGAGTGCATCACACTCAGTGTAGTATAGGTGTTCTTGATGTCATCCAGGTTCTGCACAGCTCTGTCCAGTCCGTGCATCACGGTCTTTCCGTGCTTGGCCACGGCGGGGTTACCCATGATGGCAGCGGGTGTGGACAGGTTGCCGAAGGTGCTGAAGTGTCTCTGAGTCCATGGAGACACGATCAGAagtctaaaaataaataaaacaggctGCCATTAAAATTATACTTCACAATCAATATGGTCTGTATCG

Function


NR:

description
Hemoglobin subunit beta-4

GO: NA

KEGG:

id description

RNA


RNA id representative length rna type GC content exon number start site end site
TU1338795 False 679 lncRNA 0.51 3 40576218 40577203
TU1338796 False 304 lncRNA 0.43 2 40576218 40577203
TU1338797 True 592 lncRNA 0.48 2 40576218 40576939

Neighbor


gene id symbol gene type direction distance location
LOC110486354 LOC106607383 coding upstream 2735 40572568 ~ 40573483 (+)
LOC110486353 LOC106601071 coding upstream 34481 40540811 ~ 40541737 (+)
LOC110486351 LOC106601078 coding upstream 40604 40534711 ~ 40535614 (+)
LOC110486349 LOC106607370 coding upstream 68389 40506317 ~ 40507829 (+)
aanat-2 aanat-2 coding upstream 137361 40436236 ~ 40438857 (+)
LOC100136296 LOC100136296 coding downstream 1218 40578421 ~ 40579519 (+)
LOC118938288 NA coding downstream 3488 40580691 ~ 40583273 (+)
LOC118938287 LOC106609103 coding downstream 11519 40588722 ~ 40592987 (+)
LOC118936354 NA coding downstream 33076 40610279 ~ 40615060 (+)
LOC118936300 LOC100135791 coding downstream 37094 40614297 ~ 40615287 (+)
G1173987 NA non-coding upstream 4193 40569804 ~ 40572025 (+)
G1173990 NA non-coding upstream 98776 40476588 ~ 40477442 (+)
G1173964 LOC106607368 non-coding upstream 128903 40446307 ~ 40447315 (+)
G1173959 NA non-coding upstream 143080 40432395 ~ 40433138 (+)
G1173940 LOC106572245 non-coding upstream 167394 40408588 ~ 40408824 (+)
G1174047 NA non-coding downstream 47158 40624361 ~ 40624631 (+)
G1174055 NA non-coding downstream 60471 40637674 ~ 40639607 (+)
G1174069 LOC106607387 non-coding downstream 87724 40664927 ~ 40665150 (+)
G1174070 NA non-coding downstream 89972 40667175 ~ 40667968 (+)
G1174071 LOC106601059 non-coding downstream 90869 40668072 ~ 40669829 (+)
polr3k rpc11 other upstream 220245 40354342 ~ 40357833 (+)
G1173715 LOC106601095 other upstream 420039 40080474 ~ 40200482 (+)
G1172996 NA other upstream 1102439 39473458 ~ 39473779 (+)
LOC110486302 LOC106607335 other upstream 1697839 38876161 ~ 38878379 (+)
G1170455 NA other upstream 1985511 38589772 ~ 38590707 (+)
G1174211 NA other downstream 328328 40905531 ~ 40906473 (+)
G1174245 LOC106607208 other downstream 424680 41001883 ~ 41003024 (+)
LOC110486375 LOC106601281 other downstream 478249 41055429 ~ 41065432 (+)
G1175164 NA other downstream 962288 41539491 ~ 41540680 (+)
LOC110486395 ccd56 other downstream 1196287 41773456 ~ 41777013 (+)

Expression



Co-expression Network