G1174844


Basic Information

Item Value
gene id G1174844
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 40744625 ~ 40748705 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1339742
cagatatctatctatagaggaggagaggagcgagaaaagaagactacagatatctatctatagaggaggagaggcgcgagaaaagaagagaggattACGTTTAATAAAGAAAGGAAGACGCTGTGATGAGGGGACCTGAGGGTCCCGCCTCCATTTTCCCATTTTCCCTTTATGAAGAAGCGCTACCGGTGCAAGATGGCTGTGTGCCTTTCTGGAAACACCAGCTCCTGAAACATGAGGCTGTCGTGACGCAATGCATCGTGGGACAGGAGTGTCTGCTTTTGTCTTCATTTTTGATTGTCTCTTGTTCAAAGATCTATTGTAACTGTTCatgatttagtgtgtgtgtgcgtgtgtgcgcgcatgtgcgtgtgtgtgtgcgcgtgtgtgagtgtgcgtgtgtcacATGCTCAGTCTGTTTCTGTGGTGACAGGTTTTCAGCTGTAAGTCTTCCTTTGTTGCTTTTCAAGTTGATGAGACGTTTCAGAACTCGTAGATAAAGGAGAAGTCACTATCACTACACCACCACACCTGCTGCTTGTGGACTCTCCAGTTTTTACATACAAAAATGATTATTCTTTTTTTACTTTCTGAGGATAAGCCATGAGATACTTTAGAGTATATGTTCTGCCTGTTTTCTATTTATTCTTGTTTTTTGCTAAATATGTTTGAAGAATTAGGATAATATCATCAGCAGCACAAATTCACATTCCATCACTTACCCAGTCACACTGTATTTATTCACCAGTCTCTTCTCACTTACTGCATCAGTTGTCACCAAAGCAACAGATTGGAAACTGATGAGGGGAGAGATGCTTTGACAGGGCAGACTGAGAGGATTTTGTCAGGGTGATTTCAGGATTGGAGGGAATCGAAAGAACGAGCTTGGCCAGAAAGGAGGCTGttcagacagtcacacacagccATTCTTGTTACGTTTGAAGCTTTTCTGCCTTAATGTCAAATGCAGGATACATACCTGCCTCTATGTAGATTTATAAGATAAATTCAAAATATCCTAGTATATTTATACCATGTCTGTATGCCTCTatctgtgagtgtctgtgtgtctatacACAATGTACCCAGCATCAGCATATGGACAGGAACATTTTATGGCCAATATTAAGAATGTGTTGTGTCAGTTACGAGGGCccaataaataggccaatttAGCTCCAGGGAAGGCAGGTCAAATGAGTGGTAAACATATAGCTGTTGCAGACCGGATGTCGAGTAAGTATATTTTCTCACAATACTTTTTCTGGTTGAAAATAACATCTGTCTTGGGCTGAGTAAATGTCTGATGTTATgttgagaaagagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagagagagagagagagacagagagagagagagagagagagagagagacctttctCTTGTCATGTGTTGTGTGTCGTCACTCACTAGAATCACCATCCTAGCTGTAAGAGGTCATGGTCACAGGACTGATCAGCACACAGCTTGAATAGGTCTCAGTTTGACTTGGAGTTGTTCACagggtaaaaaaacaacaacataagtATAGCTGGTTTCTGCTGGTCGGTAACGTAGCTCAGCCTGTGCCTGATGGAACAGAGGCCTGAGATCCATCCAGTCCAACTCTGTGATTGGCTGGAGCAGCATTGCGGTGTCACCGCACAGGCCTTTAATTGTTGTAATATGGGAATCCAACGTTACTGTCTCAGTACCTGGAGTAGGAGATTCCCAATGAAGCTTCCCCCTGTCTTTGAAGATATATGGCTTTGTTTATCTGgctttttgttttgtcatgagctataaaaacaaataaatatttgATTTGCCATTTTAACACAATACTGTAGCGATCATTTCTTATTAAGAAATGACTCTGTTGATGAATTACTGACATTCTTTTTAAATATTGAGAAGAAAACCATGGAAAATACCCACAAGTCTTTTCTTCGAACAGTTTGTGTacagtttttatttttgtatcattcTGGTGGATGGTCTAGAAACGCAACTAGAATGACATATTGATAATACAACTATTAGCATTATCACAGCTTGTTTTGTATATTTTGTAATGTTGGATTGTAAATGACACATTTATTCAGGTCATTATCATTGATAATTAACCACGTTTTAGTTCTAAGAAAATAACTAAATCAGTAAAACCACACCGTCACGCTTTCCTTCTCTTTTTCTGTCCTCAtctttcctctgtctttctcttttgtGCTATCATTTTTCTCACACAGAGAAGTGTGTAAATGTCATTATTAGATTAATTAGATAGATTGGATGAAACAGGATTAGATTAATCATCAGAAAAATGAAAATGTTTTGTACCCGAACTTTATCTTAAGGGAGGTTGTAGGGTAGACAATGTGGTTAATGTGGGTACAGTATGTGTTTTTTTTGAGGATTTGGTAGTTATGTCTCTCACTGGTTCCGTTGGACCTGGTTTCAAGCCTTAGTTTTTTTCTATTGTGCGATTCCATGTTTGCCCATTCCATATTGCTCAAGTCATAATCAATGAAAACTATTCATTATCAATATGCCATGTAGGAGTGATTGTGAGTAATTTACAGATGTGTATGGGTGAAgcgagaggtaaaaaaaaaacaagagggTTCTGAGAGAGACATTGCGTAGCCATTTTGAAATGAGCACCTCCACTTCTTGATCACTTTTGTCATATTAGACTCCCTCTGAGAACAATTATCTGGGCTTTAAATCATGTGTTACTTGTTCACAAGTTAGGAAAAATTATATAAATGGAAAAAACACCATGAAATGATTGTAATATTTGTAAATTATATTGCTGTAATGTGTAAAATGTGTCCCAAGttattttttattatattatttttatgAAAGGTTTTCTTCTGAGAGAACTGAGGTGTTATTTTGTGAATAAAATGCATTTAATAAGCAAACAGCTATATAATACAATTATATATcagtatatttttattttatttcactgttCGGTACTGTAAAGTGTGTTAAAATTACAAATAAAGGAAGATTTTTTT
>TU1339743
ggagaggagcgagaaaagaagactacagatatctatctatagaggaggagaggagcgagaaaagaagactacagatatctatctatagaggaggagtggcgcgagaaaagaagagaggattACGTTTAATAAAGAAAGGAAGACGCTGTGATGAGGGGACCTGAGGGTCCCGCCTCCATTTTCCCATTTTCCCTTTATGAAGAAGCGCTACCGGTGCAAGATGGCTGTGTGCCTTTCTGGAAACACCAGCTCCTGAAACATGAGGCTGTCGTGACGCAATGCATCGTGGGACAGGAGTGTCTGCTTTTGTCTTCATTTTTGATTGTCTCTTGTTCAAAGATCTATTGTAACTGTTCatgatttagtgtgtgtgtgtgcgtgcgtgtgcgtgcgtgtgcgtgtgtgcgcgcatgtgcgtgtgtgtgtgcgcgtgtgtgagtgtgcgtgtgtcacATGCTCAGTCTGTTTCTGTGGTGACAGGTTTTCAGCTGTAAGTCTTCCTTTGTTGCTTTTCAAGTTGATGAGACGTTTCAGAACTCGTAGATAAAGGAGAAGTCACTATCACTACACCACCACACCTGCTGCTTGTGGACTCTCCAGTTTTTACATACAAAAATGATTATTCTTTTTTTACTTTCTGAGGATAAGCCATGAGATACTTTAGAGTATATGTTCTGCCTGTTTTCTATTTATTCTTGTTTTTTGCTAAATATGTTTGAAGAATTAGGATAATATCATCAGCAGCACAAATTCACATTCCATCACTTACCCAGTCACACTGTATTTATTCACCAGTCTCTTCTCACTTACTGCATCAGTTGTCACCAAAGCAACAGATTGGAAACTGATGAGGGGAGAGATGCTTTGACAGGGCAGACTGAGAGGATTTTGTCAGGGTGATTTCAGGATTGGAGGGAATCGAAAGAACGAGCTTGGCCAGAAAGGAGGCTGttcagacagtcacacacagccATTCTTGTTACGTTTGAAGCTTTTCTGCCTTAATGTCAAATGCAGGATACATACCTGCCTCTATGTAGATTTATAAGATAAATTCAAAATATCCTAGTATATTTATACCATGTCTGTATGCCTCTatctgtgagtgtctgtgtgtctatacACAATGTACCCAGCATCAGCATATGGACAGGAACATTTTATGGCCAATATTAAGAATGTGTTGTGTCAGTTACGAGGGCccaataaataggccaatttAGCTCCAGGGAAGGCAGGTCAAATGAGTGGTAAACATATAGCTGTTGCAGACCGGATGTCGAGTAAGTATATTTTCTCACAATACTTTTTCTGGTTGAAAATAACATCTGTCTTGGGCTGAGTAAATGTCTGATGTTATgttgagaaagagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagagagagagagagagacagagagagagagagagagagagagagagacctttctCTTGTCATGTGTTGTGTGTCGTCACTCACTAGAATCACCATCCTAGCTGTAAGAGGTCATGGTCACAGGACTGATCAGCACACAGCTTGAATAGGTCTCAGTTTGACTTGGAGTTGTTCACagggtaaaaaaacaacaacataagtATAGCTGGTTTCTGCTGGTCGGTAACGTAGCTCAGCCTGTGCCTGATGGAACAGAGGCCTGAGATCCATCCAGTCCAACTCTGTGATTGGCTGGAGCAGCATTGCGGTGTCACCGCACAGGCCTTTAATTGTTGTAATATGGGAATCCAACGTTACTGTCTCAGTACCTGGAGTAGGAGATTCCCAATGAAGCTTCCCCCTGTCTTTGAAGATATATGGCTTTGTTTATCTGgctttttgttttgtcatgagctataaaaacaaataaatatttgATTTGCCATTTTAACACAATACTGTAGCGATCATTTCTTATTAAGAAATGACTCTGTTGATGAATTACTGACATTCTTTTTAAATATTGAGAAGAAAACCATGGAAAATACCCACAAGTCTTTTCTTCGAACAGTTTGTGTacagtttttatttttgtatcattcTGGTGGATGGTCTAGAAACGCAACTAGAATGACATATTGATAATACAACTATTAGCATTATCACAGCTTGTTTTGTATATTTTGTAATGTTGGATTGTAAATGACACATTTATTCAGGTCATTATCATTGATAATTAACCACGTTTTAGTTCTAAGAAAATAACTAAATCAGTAAAACCACACCGTCACGCTTTCCTTCTCTTTTTCTGTCCTCAtctttcctctgtctttctcttttgtGCTATCATTTTTCTCACACAGAGAAGTGTGTAAATGTCATTATTAGATTAATTAGATAGATTGGATGAAACAGGATTAGATTAATCATCAGAAAAATGAAAATGTTTTGTACCCGAACTTTATCTTAAGGGAGGTTGTAGGGTAGACAATGTGGTTAATGTGGGTACAGTATGTGTTTTTTTTGAGGATTTGGTAGTTATGTCTCTCACTGGTTCCGTTGGACCTGGTTTCAAGCCTTAGTTTTTTTCTATTGTGCGATTCCATGTTTGCCCATTCCATATTGCTCAAGTCATAATCAATGAAAACTATTCATTATCAATATGCCATGTAGGAGTGATTGTGAGTAATTTACAGATGTGTATGGGTGAAgcgagaggtaaaaaaaaaacaagagggTTCTGAGAGAGACATTGCGTAGCCATTTTGAAATGAGCACCTCCACTTCTTGATCACTTTTGTCATATTAGACTCCCTCTGAGAACAATTATCTGGGCTTTAAATCATGTGTTACTTGTTCACAAGTTAGGAAAAATTATATAAATGGAAAAAACACCATGAAATGATTGTAATATTTGTAAATTATATTGCTGTAATGTGTAAAATGTGTCCCAAGttattttttattatattatttttatgAAAGGTTTTCTTCTGAGAGAACTGAGGTGTTATTTTGTGAATAAAATGCATTTAATAAGCAAACAGCTATATAATACAATTATATATcagtatatttttattttatttcactgttCGGTACTGTAAAGTGTGTTAAAATTACAAATAAAGGAAGATTTTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1339742 False 3068 lncRNA 0.38 2 40744625 40747714
TU1339743 True 3115 lncRNA 0.38 2 40744625 40748705

Neighbor

gene id symbol gene type direction distance location
LOC110486362 LOC106607221 coding downstream 1675 40733709 ~ 40742950 (-)
LOC110486360 LOC106607387 coding downstream 44428 40578110 ~ 40700197 (-)
LOC110486359 LOC106601060 coding downstream 83802 40638211 ~ 40660823 (-)
LOC100135790 LOC100135790 coding downstream 113937 40629737 ~ 40630688 (-)
LOC110486356 LOC106607377 coding downstream 116239 40627548 ~ 40628386 (-)
LOC110486363 LOC106607220 coding upstream 390 40749095 ~ 40775504 (-)
LOC110486364 LOC106601288 coding upstream 82697 40831402 ~ 40843483 (-)
LOC110486365 LOC106607218 coding upstream 95346 40844051 ~ 40859686 (-)
LOC110486366 LOC106607217 coding upstream 115101 40863806 ~ 40869040 (-)
LOC110486367 LOC106607216 coding upstream 120446 40869151 ~ 40871662 (-)
G1174839 NA non-coding downstream 18789 40724686 ~ 40725836 (-)
G1174792 NA non-coding downstream 150753 40592979 ~ 40593872 (-)
G1174706 NA non-coding downstream 202798 40540779 ~ 40541827 (-)
G1174772 NA non-coding downstream 208168 40535767 ~ 40536457 (-)
G1174918 NA non-coding upstream 147956 40896661 ~ 40896873 (-)
G1174933 NA non-coding upstream 169174 40917879 ~ 40918146 (-)
G1174973 NA non-coding upstream 220790 40969495 ~ 40969699 (-)
G1174974 NA non-coding upstream 221726 40970431 ~ 40970768 (-)
G1174741 NA other downstream 286944 40456895 ~ 40457681 (-)
G1174658 NA other downstream 427766 40316118 ~ 40316859 (-)
G1173645 NA other downstream 819666 39923922 ~ 39924959 (-)
LOC110486318 kdm8 other downstream 1413386 39328216 ~ 39331966 (-)
LOC110486313 snn other downstream 1494315 39248150 ~ 39250310 (-)
col5a3a LOC106607203 other upstream 536077 41282052 ~ 41362985 (-)
G1175904 LOC106607178 other upstream 1248609 41997314 ~ 41997637 (-)
G1175906 NA other upstream 1250647 41999352 ~ 42000091 (-)
G1176164 NA other upstream 1579339 42328044 ~ 42328572 (-)

Expression

G1174844 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
End of interactive chart.

G1174844 Expression in each Bioproject

Bar chart with 19 bars.
G1174844 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Co-expression Network