G1175006


Basic Information

Item Value
gene id G1175006
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 41058068 ~ 41062560 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1339927
GCACAGTAATGCTGAGAGGTTCTGATGTCACTGTAGGATGGGGTTGTGGTCCCTCTGGTCCCAGGTCCAGTTCTGCTCTACATCTATACTGATCTCCATCATCATCTCTACTGGGGCTGATCATCAGAGTAGCTGACACATCCTCTGGTCTCTTACTGACGCTACTGTAAGTTACATTATCTAAGAGTTCATTCCCTTTGTACCACTTCACAACCAGGTTCTGTAGAGGAGCGATGTTCTGAATGTCACACTGCAGCTGGTACTGTGTCCCCTCCACCATGGGACCAGAGTGGCTCAGAACAGagatggagactctgtctggagT
>TU1339929
GCCAACTCACAGTGCACAGTAATGCTGAGAGGTTCTGATGTCACTGTAGGATGGGGTTGTGGTCCCTCTGGTCCCAGGTCCAGTTCTGCTCTACATCTATACTGATCTCCATCATCATCTCTACTGGGGCTGATCATCAGAGTAGCTGACACATCCTCTGGTCTCTTACTGACGCTACTGTAAGTTACATTATCTAAGGGTTCATTCCCTTTGTACCACTTCACAACCAGGTTCTGTAGAGGAGCGATGTTCTGAATGTCACACTGCAGCTGGTACTGTGTCCCCTCCACCATGGGACCAGAGTGGCTCAGAACAGagatggagactctgtctggagT
>TU1339930
TGTAGAGAATGACTGGAAGTACTATTGAGGGTTGTTCGCCGTCAATGAGATTGATGTAGCATTTGGGTTCTATTGTCCAATCAGTAAGGTTATCCACAGTCCAGGTGACAACGTTGACATGTTCTTCTAAACGTTTACCTCCGAATGTGGCCTCCCAGCCCATCCCATCATGGTCTGTGGATGATGTGCTGCAGTTGACTGAGACTGAGTCTCCATATCTCACCACCACTCTGGGAGGGTTGAGCTCAAGAGGAAAGGTAACTACTGTAAAAACATACAAGAATGAAGACATCAATGTGAAATCCACATCAAATataaactgttctgccttgtgAGATAAGTGAGGGTGAATTAAATAATGTGAGCACAGAGATGAGCTGGAAAATACATTTTGGCTTGGCTGTTCCTGGAAGGGTGGTCATAGTTTCTGGAGTTGAGGGTGCTGTGGAGAGCATCGTTGGGTGTTGTTGTGGAGGTACATCTACTAAGACATGTATCTGCTTGGTGATGGAGCCCAGGCTATTTGTGACTGTGCAGTTGTAAGTTGCATTAGCTGTTACTCTGGAGATATTGAGAGTACGCAGGCGCCCCACAGTGATCTCATTGGCATTTCCCTCTGCAGTGTTGTTGGTCCACCTCAGCTCAGGAGGAGGGTTCCCCTCAGCACTGCAGTCCAGAGACACGTCACTGCCTGCACTCACCTCCACTATGTCATTTCCTGGAAGGAACTCAGGAG
>TU1339933
TGTAGAGAATGACTGGAAGTACTATTGAGGGTTGTTCGCCGTCAATGAGATTGATGTAGCATTTGGGTTCTATTGTCCAATCAGTAAGGTTATCCACAGTCCAGGTGACAACGTTGACATGTTCTTCTAAACGTTTACCTCCGAATGTGGCCTCCCAGCCCATCCCATCATGGTCTGTGGATGATGTGCTGCAGTTGACTGAGACTGAGTCTCCATATCTCACCACCACTCTGGGAGGGTTGAGCTCAAGAGGAAAGGTAACTACTGTAAAAACATACAAGAATGAAGACATCAATGTGAAATCCACATCAAATataaactgttctgccttgtgAGATAAGTGAGGGTGAATTAAATAATGTGAGCACAGAGATGAGCTGGAAAATACATTTTGGCTTGGCTGTTCCTGGAAGGGTGGTCATAGTTTCTGGAGTTGAGGGTGCTGTGGAGAGCATCGTTGGGTGTTGTTGTGGAGGTACATCTACTAAGACATGTATCTGCTTGGTGATGGAGCCCAGGCTATTTGTGACTGTGCAGTTGTAAGTTGCATTAGCTGTTACTCTGGAGATATTGAGAGTACGCAGGCGCCCCACAGTGATCTCATTGGCATTTCCCTCTGCAGTGTTGTTGGTCCACCTCAGCTCAGGAGGAGGGTTCCCCTCAGCACTGCAGTCCAGAGACACGTCACTGCCTGCACTCACCTCCACTATGTCATTTCCTGGAAGGAACTCAGGAG
>TU1339932
TGTAGAGAATGACTGGAAGTACTATTGAGGGTTGTTCGCCGTCAATGAGATTGATGTAGCATTTGGGTTCTATTGTCCAATCAGTAAGGTTATCCACAGTCCAGGTGACAACGTTGACATGTTCTTCTAAACGTTTACCTCCGAATGTGGCCTCCCAGCCCATCCCATCATGGTCTGTGGATGATGTGCTGCAGTTGACTGAGACTGAGTCTCCATATCTCACCACCACTCTGGGAGGGTTGAGCTCAAGAGGAAAGGTAACTACTGTAAAAACATACAAGAATGAAGACATCAATGTGAAATCCACATCAAATataaactgttctgccttgtgAGATAAGTGAGGGTGAATTAAATAATGTGAGCACAGAGATGAGCTGGAAAATACATTTTGGCTTGGCT

Function

NR:

description
intercellular adhesion molecule 1-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1339927 False 325 lncRNA 0.49 3 41058068 41061452
TU1339929 False 338 lncRNA 0.50 2 41058068 41059935
TU1339930 False 736 lncRNA 0.47 2 41058765 41062560
TU1339933 False 736 lncRNA 0.47 2 41058765 41062560
TU1339932 True 402 lncRNA 0.43 2 41060629 41062560

Neighbor

gene id symbol gene type direction distance location
ppan LOC106607208 coding downstream 51617 41001863 ~ 41006451 (-)
p2ry11 LOC106601184 coding downstream 56247 40999870 ~ 41001821 (-)
eif3g LOC106607209 coding downstream 64075 40989587 ~ 40993993 (-)
LOC110486368 LOC106607214 coding downstream 165677 40885683 ~ 40892391 (-)
LOC110486370 LOC106607215 coding downstream 174163 40872661 ~ 40883905 (-)
LOC110485175 LOC106601278 coding upstream 70389 41132949 ~ 41250343 (-)
col5a3a LOC106607203 coding upstream 219918 41282052 ~ 41362985 (-)
LOC110486379 LOC106601273 coding upstream 446818 41479727 ~ 41517590 (-)
LOC110486383 myst2 coding upstream 478600 41541160 ~ 41553591 (-)
LOC110486384 LOC106601296 coding upstream 492429 41554989 ~ 41558850 (-)
G1174984 NA non-coding downstream 68678 40988879 ~ 40989390 (-)
G1174975 NA non-coding downstream 86857 40970989 ~ 40971211 (-)
G1174974 NA non-coding downstream 87300 40970431 ~ 40970768 (-)
G1174973 NA non-coding downstream 88369 40969495 ~ 40969699 (-)
G1174933 NA non-coding downstream 139922 40917879 ~ 40918146 (-)
G1175035 NA non-coding upstream 86811 41149371 ~ 41151482 (-)
G1175071 NA non-coding upstream 170736 41233296 ~ 41234113 (-)
G1175094 NA non-coding upstream 206061 41268621 ~ 41268839 (-)
G1175101 NA non-coding upstream 216816 41279376 ~ 41279725 (-)
LOC110486364 LOC106601288 other downstream 223432 40831402 ~ 40843483 (-)
G1174741 NA other downstream 600387 40456895 ~ 40457681 (-)
G1174658 NA other downstream 741209 40316118 ~ 40316859 (-)
G1173645 NA other downstream 1133109 39923922 ~ 39924959 (-)
LOC110486318 kdm8 other downstream 1726829 39328216 ~ 39331966 (-)
G1175904 LOC106607178 other upstream 934754 41997314 ~ 41997637 (-)
G1175906 NA other upstream 936792 41999352 ~ 42000091 (-)
G1176164 NA other upstream 1265484 42328044 ~ 42328572 (-)
LOC110486413 rbx1 other upstream 1390599 42453094 ~ 42456995 (-)

Expression


Co-expression Network