G1175118


Basic Information

Item Value
gene id G1175118
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 41377195 ~ 41378337 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1340058
AACTATCGATACACTCTTTATAATATCCACATGGTGCTCCCCATCTTCACAATGGATCAAAGAACAAACATTTCTAAGAATTGTACCGGTACTGTAGATCTACTTTTCAGACTTAAGACAAGAAAACACAAACCGTCAATGACACTTTACAGCCATCCTGTAACATTTGGGTGTGTGAATGTTtgatttgtgtttgtgtttctccaGACACTCTTTCCATGGTGGTGGGTTGAGGCTGGGGAGGCAGTTGAGGTGAGAAGGGAAggaggcaggagctgggggggagTTCCTGGCGTGCCTTTCCCCCTGCCTAGGGAGTCTGTGGACAGGTGTGTGTGGAGGTATTCACATTAGGAGAGCTGCTGGGGAGGGAATGTTGTCAGCAGCCTTCTAGCTATCACTCTGGtatttgaagagagagagagaggtaggtaggtaggtaagtaggtaggtaggtaggtaggtaggtaagtaggtaggtaggtaggaaaggaaagagagaaggagtggTGCAAGCCCGTACACGTTGTTTTCCCCTGCCACGCGCACTCCTCCCTCAGAGCCATATACAAATCCTCCTCTTTTCTCGCTCTCCACTTTCTCCTACTCCACCTCCTTCATCCTCCAAGTTGCCTCCATCTTTCAGTCCTCCTTTACCTCCCTACTGCAGACAGGTGAGATAAAGCACCATAATAGGCTAATAGTCCATTTCCTGTTTGCTGAGTTGAAGGATACTTGAACGTATGCCTTTTGGATGGAACCATCAGTTCTATTTATCCCTCAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1340058 True 785 lncRNA 0.47 2 41377195 41378337

Neighbor

gene id symbol gene type direction distance location
col5a3a LOC106607203 coding downstream 14210 41282052 ~ 41362985 (-)
LOC110485175 LOC106601278 coding downstream 126852 41132949 ~ 41250343 (-)
ppan LOC106607208 coding downstream 370744 41001863 ~ 41006451 (-)
p2ry11 LOC106601184 coding downstream 375374 40999870 ~ 41001821 (-)
eif3g LOC106607209 coding downstream 383202 40989587 ~ 40993993 (-)
LOC110486379 LOC106601273 coding upstream 131041 41479727 ~ 41517590 (-)
LOC110486383 myst2 coding upstream 162823 41541160 ~ 41553591 (-)
LOC110486384 LOC106601296 coding upstream 176652 41554989 ~ 41558850 (-)
LOC110486385 LOC100194731 coding upstream 185718 41564055 ~ 41567425 (-)
LOC110486387 LOC106601269 coding upstream 195112 41573449 ~ 41581577 (-)
G1175101 NA non-coding downstream 97470 41279376 ~ 41279725 (-)
G1175094 NA non-coding downstream 108356 41268621 ~ 41268839 (-)
G1175071 NA non-coding downstream 143082 41233296 ~ 41234113 (-)
G1175035 NA non-coding downstream 225713 41149371 ~ 41151482 (-)
G1175117 NA non-coding upstream 131 41378468 ~ 41378928 (-)
G1175142 NA non-coding upstream 12562 41390899 ~ 41391108 (-)
G1175148 NA non-coding upstream 22848 41401185 ~ 41401418 (-)
G1175151 NA non-coding upstream 27328 41405665 ~ 41405869 (-)
G1175155 NA non-coding upstream 32595 41410932 ~ 41411242 (-)
LOC110486364 LOC106601288 other downstream 542559 40831402 ~ 40843483 (-)
G1174741 NA other downstream 919514 40456895 ~ 40457681 (-)
G1174658 NA other downstream 1060336 40316118 ~ 40316859 (-)
G1173645 NA other downstream 1452236 39923922 ~ 39924959 (-)
G1175904 LOC106607178 other upstream 618977 41997314 ~ 41997637 (-)
G1175906 NA other upstream 621015 41999352 ~ 42000091 (-)
G1176164 NA other upstream 949707 42328044 ~ 42328572 (-)
LOC110486413 rbx1 other upstream 1074822 42453094 ~ 42456995 (-)
LOC110487542 LOC106607166 other upstream 1091365 42469256 ~ 42477053 (-)

Expression


Co-expression Network