G1175368


Basic Information

Item Value
gene id G1175368
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 41453425 ~ 41454661 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1340346
gtagtaagtggacctgctgtcagactgatggagtttacatggatgtacctgtagtaagtggacctactgtcagactgatggagtttacatggatgtacctgtagtaggtggacctactgtcagactaaTGGATctttcatggatgtacctgtagtaagtggacctactgtcagactgatggagtttacatggatgtacctgtagtaagtggacctactgtcagactaaTGGATCtgacatggatgtacctgtagtaagtggacctactgtcagactgatggagtttacatggatgtacctgtagtaagtggacctactgtcagactgatggagtttacatggatgtacctgtagtaagtggacctactgtcagactgatggatcttacatggatgtacctgtagtaagtggacctactgtcagactgatggagtttacatggatgtacctgtagtaagtggacctactgtcagactgatggatctgacatggatgtacctgtagtaagtggacctactgtcagactgatggagtttacatggatgtacctgtagtaagtggacctactgtcagactgatggatcttacatggatgtacctgtagtaagtggacctactgtcagactgatggagtttacatggatgtacctgtagtaagtggacctactgtcagactgatggatcttacatggatgtacctgtagtaagtggacctactgtcagactgatggagtttacatggatgtacctgtagtaagtggacctactgtcagactgatggagtttacatggatgtacctgtagtaagtggacctactgtcagactgatggagtttacatggatgtacctgtagtaagtggacctactgtcagactaaTGGATCtgacatggatgtacctgtagtaagtggacctactgtcagactgatggatctggTAGGGAGTTGGTAGGGATTTATGTGGGGGTTTTTAATGTTATTTTTCATGGTAGTACAGAATTGGCCAGATCATGATTGATCGTAcattccagcacagtaggtggcggcatgcacttAAACGTTTGTTTGCGGACCGCCATGATGTAATAGAAGAATAAGACTTCCCAACGTGATTTTCAAGCAAGCAGGTGAGTTGCGGTAGAAATGTTACCATCTAAACCGTGTCTTTTTAGGAAAAATAAGCAACATAATGACTTGGCCTAAGCTTGACTGTAAAGAAACACTAACACATACCAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1340346 True 1237 lncRNA 0.43 1 41453425 41454661

Neighbor

gene id symbol gene type direction distance location
col5a3a LOC106607203 coding downstream 90440 41282052 ~ 41362985 (-)
LOC110485175 LOC106601278 coding downstream 203082 41132949 ~ 41250343 (-)
ppan LOC106607208 coding downstream 446974 41001863 ~ 41006451 (-)
p2ry11 LOC106601184 coding downstream 451604 40999870 ~ 41001821 (-)
eif3g LOC106607209 coding downstream 459432 40989587 ~ 40993993 (-)
LOC110486379 LOC106601273 coding upstream 54717 41479727 ~ 41517590 (-)
LOC110486383 myst2 coding upstream 86499 41541160 ~ 41553591 (-)
LOC110486384 LOC106601296 coding upstream 100328 41554989 ~ 41558850 (-)
LOC110486385 LOC100194731 coding upstream 109394 41564055 ~ 41567425 (-)
LOC110486387 LOC106601269 coding upstream 118788 41573449 ~ 41581577 (-)
G1175155 NA non-coding downstream 42183 41410932 ~ 41411242 (-)
G1175151 NA non-coding downstream 47556 41405665 ~ 41405869 (-)
G1175148 NA non-coding downstream 52007 41401185 ~ 41401418 (-)
G1175142 NA non-coding downstream 62317 41390899 ~ 41391108 (-)
G1175117 NA non-coding downstream 74497 41378468 ~ 41378928 (-)
G1175405 NA non-coding upstream 69415 41524076 ~ 41524555 (-)
G1175407 NA non-coding upstream 79616 41534277 ~ 41535871 (-)
G1175419 NA non-coding upstream 107824 41562485 ~ 41562685 (-)
G1175422 NA non-coding upstream 113066 41567727 ~ 41568036 (-)
LOC110486364 LOC106601288 other downstream 618789 40831402 ~ 40843483 (-)
G1174741 NA other downstream 995744 40456895 ~ 40457681 (-)
G1174658 NA other downstream 1136566 40316118 ~ 40316859 (-)
G1173645 NA other downstream 1528466 39923922 ~ 39924959 (-)
G1175904 LOC106607178 other upstream 542653 41997314 ~ 41997637 (-)
G1175906 NA other upstream 544691 41999352 ~ 42000091 (-)
G1176164 NA other upstream 873383 42328044 ~ 42328572 (-)
LOC110486413 rbx1 other upstream 998498 42453094 ~ 42456995 (-)
LOC110487542 LOC106607166 other upstream 1015041 42469256 ~ 42477053 (-)

Expression


Co-expression Network