G1175407


Basic Information

Item Value
gene id G1175407
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 41534277 ~ 41535871 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1340425
CACAGTTTTGGCCCTCAGGTTCTCtgacaggctattccagaggctgggggtaTAATAACTAAaagctgcctctccatgcctcttggccCTGAGCTTTAGGACAGTTAAAAGGACAGtgtcagaggacctgagggacctactgggtacataacttaaaagcatgtctgacatgcaTTGGGGTGCACAAttgtggattgatttaaaaatcCAGAGAAGAATCTTAAAATtaattctaaaactcacaggcagccagtacAGAGACctttaaaccggtgtaatgtgtgctctctggtcttggtcagtacccatgctgcagcattctgtatgttttacagtacagAGACCTTTAAACCAGTGTAATGTCTGCTCtcagtctggtcttggtcagtacccatgctgcagcattctgtatgttttgtagttgaccaatggctttcttgggtagaccagacaggagaacattacagtagtcaagcctgcttgtaataaaagcatggatgtgtctctctgtatcagcctgagagagaaacggcctcatcttggcaatgttcctcaggtggtaaaaagcttttttggtcacattcctaacgTGTGATTTGATATTTTGTTCAGAATCTAAAGTAAAACCTAGGttttttatcttttgttttatctttattgcccATTAATTAAAATGTGCAACTAGATTCTCTGTCTGTGAtttggctccaacaataagtacCCCAGCTGGAGGACGTTGTGAGCCATCtaagtatttaaatcactaatacgGCCTAATAATTTATCTGTGGagctaaaatcctctggtgacacagAAATGCAAAGTTGTGTATTGTCTGCGTAGCCGTGAAAATCAATGCTTTGCTTACTGATAACGCTGCCAATGTGTAACATATATATAAACTGAACAGTAAAGGACCCAAAATCGAACTTTGTGGGACGCCACATGTGATTTGTGTTTTATGAGTTATGTTCACCAAGGGTGACAAAAAAGTCCCGACCGGTTAAATCAGTCCCAAACCAATTGATAACTGGACCAATGTCTTTCACATAGCTCTCTGGGATAATGTCAATAATACAGTTAACCAGTCCACCATCAACTATCAAGGTATTATTTATGTTAACAAAACGTTCAATTTGATTGGTAATCATCTTTGTTTGTGCTTTTAGCATAACTCTCCCAGATGCCAACATTTCATCAAGGCACACATCTACAGAAGGGAACATTTAGTTGAGGTGAGACATTTCTCTCTGACACTTTGTGGTGATTGAAAGCAGTCAGACATCTCTGGCCATGTTTAGGCGTGGAGTGATGTGGGAAGGGTCAGAGGAtgcagagagatgagatgagttagacc

Function

NR:

description
PREDICTED: uncharacterized protein LOC106632435

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1340425 True 1358 lncRNA 0.41 3 41534277 41535871

Neighbor

gene id symbol gene type direction distance location
LOC110486379 LOC106601273 coding downstream 16687 41479727 ~ 41517590 (-)
col5a3a LOC106607203 coding downstream 171292 41282052 ~ 41362985 (-)
LOC110485175 LOC106601278 coding downstream 283934 41132949 ~ 41250343 (-)
ppan LOC106607208 coding downstream 527826 41001863 ~ 41006451 (-)
p2ry11 LOC106601184 coding downstream 532456 40999870 ~ 41001821 (-)
LOC110486383 myst2 coding upstream 5289 41541160 ~ 41553591 (-)
LOC110486384 LOC106601296 coding upstream 19118 41554989 ~ 41558850 (-)
LOC110486385 LOC100194731 coding upstream 28184 41564055 ~ 41567425 (-)
LOC110486387 LOC106601269 coding upstream 37578 41573449 ~ 41581577 (-)
LOC110487540 NA coding upstream 112260 41648131 ~ 41650433 (-)
G1175405 NA non-coding downstream 9722 41524076 ~ 41524555 (-)
G1175368 NA non-coding downstream 79616 41453425 ~ 41454661 (-)
G1175155 NA non-coding downstream 123035 41410932 ~ 41411242 (-)
G1175151 NA non-coding downstream 128408 41405665 ~ 41405869 (-)
G1175419 NA non-coding upstream 26614 41562485 ~ 41562685 (-)
G1175422 NA non-coding upstream 31856 41567727 ~ 41568036 (-)
G1175440 NA non-coding upstream 68998 41604869 ~ 41605088 (-)
G1175441 NA non-coding upstream 70290 41606161 ~ 41606379 (-)
G1175452 NA non-coding upstream 84258 41620129 ~ 41620363 (-)
LOC110486364 LOC106601288 other downstream 699641 40831402 ~ 40843483 (-)
G1174741 NA other downstream 1076596 40456895 ~ 40457681 (-)
G1174658 NA other downstream 1217418 40316118 ~ 40316859 (-)
G1173645 NA other downstream 1609318 39923922 ~ 39924959 (-)
G1175904 LOC106607178 other upstream 461443 41997314 ~ 41997637 (-)
G1175906 NA other upstream 463481 41999352 ~ 42000091 (-)
G1176164 NA other upstream 792173 42328044 ~ 42328572 (-)
LOC110486413 rbx1 other upstream 917288 42453094 ~ 42456995 (-)
LOC110487542 LOC106607166 other upstream 933831 42469256 ~ 42477053 (-)

Expression


Co-expression Network