G1175218


Basic Information

Item Value
gene id G1175218
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 41604999 ~ 41605218 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1340173
TCTCAATACCAAATTACCACAAGGAACTTGCAAACTTATTTGTAAGTGATAATGGACTGTGTTGCAGCAATTAACTTTGAATAAGAGTACAGTAGCACCTTGCTCTGCTGTTTCAAGAGGTGCTTGAATATATAAGCGCAAGTCAATGACATTTAATGCCACCtgatggtgggagggagggattcAGACGTTTTCTTGAATTTCAAGGCTATTCATTGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1340173 True 220 lncRNA 0.40 1 41604999 41605218

Neighbor

gene id symbol gene type direction distance location
LOC110486388 LOC106607193 coding upstream 1879 41594491 ~ 41603120 (+)
LOC110486386 LOC106607191 coding upstream 10109 41581698 ~ 41594890 (+)
shfl LOC106607198 coding upstream 75250 41524871 ~ 41529749 (+)
LOC118938292 NA coding upstream 90002 41514455 ~ 41514997 (+)
LOC110486381 mfap4 coding upstream 95355 41508313 ~ 41509644 (+)
LOC110486389 LOC106607190 coding downstream 2700 41607918 ~ 41610175 (+)
LOC110486391 LOC106601265 coding downstream 79644 41684862 ~ 41709237 (+)
LOC110486392 NA coding downstream 111161 41716379 ~ 41724910 (+)
LOC110486393 rl23 coding downstream 119897 41725115 ~ 41732993 (+)
LOC110486394 LOC106601260 coding downstream 134290 41739508 ~ 41772444 (+)
G1175217 NA non-coding upstream 376 41604412 ~ 41604623 (+)
G1175206 NA non-coding upstream 43457 41561326 ~ 41561542 (+)
G1175204 NA non-coding upstream 44861 41559917 ~ 41560138 (+)
G1175192 NA non-coding upstream 69128 41535138 ~ 41535871 (+)
G1174442 NA non-coding upstream 194220 41410518 ~ 41410779 (+)
G1175219 NA non-coding downstream 957 41606175 ~ 41606379 (+)
G1175226 NA non-coding downstream 14664 41619882 ~ 41620120 (+)
G1175238 NA non-coding downstream 37288 41642506 ~ 41642772 (+)
G1175256 NA non-coding downstream 68362 41673580 ~ 41673840 (+)
G1175164 NA other upstream 64319 41539491 ~ 41540680 (+)
LOC110486375 LOC106601281 other upstream 545062 41055429 ~ 41065432 (+)
G1174245 LOC106607208 other upstream 601975 41001883 ~ 41003024 (+)
G1174211 NA other upstream 698526 40905531 ~ 40906473 (+)
polr3k rpc11 other upstream 1249026 40354342 ~ 40357833 (+)
LOC110486395 ccd56 other downstream 168272 41773456 ~ 41777013 (+)
G1175317 LOC106601258 other downstream 189142 41794360 ~ 41794807 (+)
G1175346 NA other downstream 251971 41857189 ~ 41859343 (+)
G1175667 NA other downstream 321057 41926275 ~ 41926656 (+)
G1176084 LOC106607173 other downstream 683873 42289091 ~ 42291866 (+)

Expression


Co-expression Network