G1175257 (LOC106607189)


Basic Information

Item Value
gene id G1175257
gene name LOC106607189
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 41674361 ~ 41674622 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1340212
CTCCAGTTTCAGGTCTCCAGAGTTGAATAGAGAAGTCTGGTGTGGCTCCTGTACATGGGATGGGCCGGGTGTCTCTAGATCAGCCTGCATCTCACTTTCTATTTCAGCCTCTAGTGACTGAGTTGGGTCAGCTGACTTCAGACCGGCCTCCTGCATCTCTGCCTCCGGTTCAGCCGCTATTGACTGAGTTGGGCTGGCTATTTCTTGATCAGCAAAGAACTGGTCCAGGCTCCCAGTATCAGGCTGATCTTTTTCATATCTG

Function

NR:

description
uncharacterized protein LOC109897337

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1340212 True 262 lncRNA 0.52 1 41674361 41674622

Neighbor

gene id symbol gene type direction distance location
LOC110486389 LOC106607190 coding upstream 64186 41607918 ~ 41610175 (+)
LOC110486388 LOC106607193 coding upstream 71241 41594491 ~ 41603120 (+)
LOC110486386 LOC106607191 coding upstream 79471 41581698 ~ 41594890 (+)
shfl LOC106607198 coding upstream 144612 41524871 ~ 41529749 (+)
LOC118938292 NA coding upstream 159364 41514455 ~ 41514997 (+)
LOC110486391 LOC106601265 coding downstream 10240 41684862 ~ 41709237 (+)
LOC110486392 NA coding downstream 41757 41716379 ~ 41724910 (+)
LOC110486393 rl23 coding downstream 50493 41725115 ~ 41732993 (+)
LOC110486394 LOC106601260 coding downstream 64886 41739508 ~ 41772444 (+)
LOC110486395 ccd56 coding downstream 98834 41773456 ~ 41777013 (+)
G1175256 NA non-coding upstream 521 41673580 ~ 41673840 (+)
G1175238 NA non-coding upstream 31589 41642506 ~ 41642772 (+)
G1175226 NA non-coding upstream 54241 41619882 ~ 41620120 (+)
G1175219 NA non-coding upstream 67982 41606175 ~ 41606379 (+)
G1175260 NA non-coding downstream 3360 41677982 ~ 41678186 (+)
G1175263 NA non-coding downstream 6260 41680882 ~ 41681308 (+)
G1175286 NA non-coding downstream 52310 41726932 ~ 41727536 (+)
G1175289 NA non-coding downstream 63210 41737832 ~ 41738067 (+)
G1175164 NA other upstream 133681 41539491 ~ 41540680 (+)
LOC110486375 LOC106601281 other upstream 614424 41055429 ~ 41065432 (+)
G1174245 LOC106607208 other upstream 671337 41001883 ~ 41003024 (+)
G1174211 NA other upstream 767888 40905531 ~ 40906473 (+)
polr3k rpc11 other upstream 1318388 40354342 ~ 40357833 (+)
G1175317 LOC106601258 other downstream 119738 41794360 ~ 41794807 (+)
G1175346 NA other downstream 182567 41857189 ~ 41859343 (+)
G1175667 NA other downstream 251653 41926275 ~ 41926656 (+)
G1176084 LOC106607173 other downstream 614469 42289091 ~ 42291866 (+)

Expression


Co-expression Network