G1175289


Basic Information

Item Value
gene id G1175289
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 41737832 ~ 41738067 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1340259
aataaattgaactgtattttaagacggttaaatgctctactaacaaaaaaagctgttagaattgtaagtatatgcatgtcccttaaggtccttgtgtaattgtaatgtgatattgtaccccctagctcgactgtctattgtttgtaatctatgtatgcttgtgttccctcatgtgctttatgcATTGATTTGTTAAATTAAAAAGCAAACATTAATCAAAACAGGTAGTTACTTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1340259 True 236 lncRNA 0.32 1 41737832 41738067

Neighbor

gene id symbol gene type direction distance location
LOC110486393 rl23 coding upstream 6773 41725115 ~ 41732993 (+)
LOC110486392 NA coding upstream 12922 41716379 ~ 41724910 (+)
LOC110486391 LOC106601265 coding upstream 28595 41684862 ~ 41709237 (+)
LOC110486389 LOC106607190 coding upstream 127657 41607918 ~ 41610175 (+)
LOC110486388 LOC106607193 coding upstream 134712 41594491 ~ 41603120 (+)
LOC110486394 LOC106601260 coding downstream 1441 41739508 ~ 41772444 (+)
LOC110486395 ccd56 coding downstream 35389 41773456 ~ 41777013 (+)
tanc2a LOC106607178 coding downstream 133581 41871648 ~ 42008584 (+)
hdac5 LOC106607176 coding downstream 309323 42047390 ~ 42133078 (+)
LOC110486402 LOC106607175 coding downstream 395562 42133629 ~ 42142203 (+)
G1175286 NA non-coding upstream 10296 41726932 ~ 41727536 (+)
G1175263 NA non-coding upstream 56524 41680882 ~ 41681308 (+)
G1175260 NA non-coding upstream 59646 41677982 ~ 41678186 (+)
G1175257 LOC106607189 non-coding upstream 63210 41674361 ~ 41674622 (+)
G1175303 LOC108429078 non-coding downstream 42338 41780405 ~ 41780816 (+)
G1175304 LOC106601258 non-coding downstream 43410 41781477 ~ 41782047 (+)
G1175307 NA non-coding downstream 46783 41784850 ~ 41785078 (+)
G1175312 NA non-coding downstream 50987 41789054 ~ 41789271 (+)
G1175314 NA non-coding downstream 52938 41791005 ~ 41791308 (+)
G1175164 NA other upstream 197152 41539491 ~ 41540680 (+)
LOC110486375 LOC106601281 other upstream 677895 41055429 ~ 41065432 (+)
G1174245 LOC106607208 other upstream 734808 41001883 ~ 41003024 (+)
G1174211 NA other upstream 831359 40905531 ~ 40906473 (+)
polr3k rpc11 other upstream 1381859 40354342 ~ 40357833 (+)
G1175317 LOC106601258 other downstream 56293 41794360 ~ 41794807 (+)
G1175346 NA other downstream 119122 41857189 ~ 41859343 (+)
G1175667 NA other downstream 188208 41926275 ~ 41926656 (+)
G1176084 LOC106607173 other downstream 551024 42289091 ~ 42291866 (+)

Expression


Co-expression Network