G1175304 (LOC106601258)


Basic Information

Item Value
gene id G1175304
gene name LOC106601258
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 41781477 ~ 41782047 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1340274
TCCTGTAGCTCCTCGCACATATCctcgttctcgctctctgtctcgtcACTGCTGACATACGAGGCGCTGCGCGTGTAGCTCATCCAGGGCTGGTTCAGGTTGCTCCCACTGAACTGGAGGCTCCCCGCTGTACCCTCCCACAGGCTCAGGCTCAGCCTCCGACCCCCCCTTCTCCtcagctcctcctcctcatcctcctccttctccttgtcTGGCTCCTTGTCTGGCTCCTTGTCTGgctcctcctcactctcctgcTGGTCCTCCTGCTCTGTCTGCTTAGGGCCTCCAGGCAAGGACTGGGCGATGTCTAGGTTACACAGGGGCCCACTGGGGGATCGCTGGGGAGGGGACACGGTTAAGGTGCTAACGCTGCTTTCTGATTCGCCCCCCTGCTCCTCGGTGCTGGTATCAGATTCACTGTCCCGGGAGGAAGGGCTGGTGCTAACGGTGACTGTGGGCGGGGTTTGGTGTTGTGGGTGGGTTTGGGGAGGATCCTGGGCGGGGCTAGCGGAGGCTGCAGGGATCTCTCTGCTGGGTGTGACTTGGAATCGGCCCACGGTAACTGTAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1340274 True 571 lncRNA 0.62 1 41781477 41782047

Neighbor

gene id symbol gene type direction distance location
LOC110486395 ccd56 coding upstream 4464 41773456 ~ 41777013 (+)
LOC110486394 LOC106601260 coding upstream 9033 41739508 ~ 41772444 (+)
LOC110486393 rl23 coding upstream 50418 41725115 ~ 41732993 (+)
LOC110486392 NA coding upstream 56567 41716379 ~ 41724910 (+)
LOC110486391 LOC106601265 coding upstream 72240 41684862 ~ 41709237 (+)
tanc2a LOC106607178 coding downstream 89601 41871648 ~ 42008584 (+)
hdac5 LOC106607176 coding downstream 265343 42047390 ~ 42133078 (+)
LOC110486402 LOC106607175 coding downstream 351582 42133629 ~ 42142203 (+)
LOC110486404 LOC106601293 coding downstream 373127 42155174 ~ 42158198 (+)
LOC110486405 LOC106601250 coding downstream 381141 42163188 ~ 42204767 (+)
G1175303 LOC108429078 non-coding upstream 661 41780405 ~ 41780816 (+)
G1175289 NA non-coding upstream 43410 41737832 ~ 41738067 (+)
G1175286 NA non-coding upstream 53941 41726932 ~ 41727536 (+)
G1175263 NA non-coding upstream 100169 41680882 ~ 41681308 (+)
G1175307 NA non-coding downstream 2803 41784850 ~ 41785078 (+)
G1175312 NA non-coding downstream 7007 41789054 ~ 41789271 (+)
G1175314 NA non-coding downstream 8958 41791005 ~ 41791308 (+)
G1175315 NA non-coding downstream 10361 41792408 ~ 41792700 (+)
G1175318 LOC106607180 non-coding downstream 12906 41794953 ~ 41795172 (+)
G1175164 NA other upstream 240797 41539491 ~ 41540680 (+)
LOC110486375 LOC106601281 other upstream 721540 41055429 ~ 41065432 (+)
G1174245 LOC106607208 other upstream 778453 41001883 ~ 41003024 (+)
G1174211 NA other upstream 875004 40905531 ~ 40906473 (+)
G1175317 LOC106601258 other downstream 12313 41794360 ~ 41794807 (+)
G1175346 NA other downstream 75142 41857189 ~ 41859343 (+)
G1175667 NA other downstream 144228 41926275 ~ 41926656 (+)
G1176084 LOC106607173 other downstream 507044 42289091 ~ 42291866 (+)
G1176278 LOC106607164 other downstream 700330 42482377 ~ 42484520 (+)

Expression


Co-expression Network