G1175878


Basic Information

Item Value
gene id G1175878
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 41961846 ~ 41962547 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1340917
CTCGTTCACCCAGTGGGCCTTATCTCAGTACCATAATGAGGAGTCAGCAGGGAAGCACAACCAGCCTTATGAGCACAGGCATCATACTGTATTGTGGGGACAATTCTCAGATAATATGAAAGTGTTGTGATATAAGCAGAGCAGCCCTCTGTGAATCTAATTGGTTCATCTTCAAAGGGGCCGGGAGCCACAGTGAGCTACTTGAATAGGATGAACTGGCCAGAAAGGTAATTCAGTTCATTGTGACATGTCTGACTCCTGAGACCCTGAAAACAGTTCAAATGGAGTTAGAATCAAGTGGGAGATGTCGTCAGCGTTAAGCAACCATCTTTTCACCTTCAATACCAAATCTACATGCAGCAGGCACAAAACAAGGCTCCTTGATACTTCTCGCTTTGTCCACACAATAGACAAAGCGtaagtttgtttgtttatgccaAACCTTCCCTAGTGAGTCTACAGACCAAAACTGAACTAGGACCAGTGGTTGAGTAACTACCTGGGAGCCTCTTGGTGGGCTGCAGTCTCATGTTGAGGGCCTGGTGGGAGAGTAGGGGGGAGGAGGGTAGCGAGCGTGACACGCCCTCCATGATACGGATGTGCTGCATGCCCTCGGTCACCGGGAGAGGAGGCCCCCCGTAGTCGCCCTCAAATAGCCCGTCACCCTCTGTGGAGCTGCCACCTGGGAAGGAAACAGAGAGG

Function

NR:

description
protein TANC2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1340917 True 702 lncRNA 0.50 1 41961846 41962547

Neighbor

gene id symbol gene type direction distance location
LOC110487541 LOC106607111 coding downstream 98037 41862761 ~ 41863809 (-)
LOC110486396 LOC106601258 coding downstream 104220 41776509 ~ 41857626 (-)
rl23 rl23 coding downstream 228857 41730039 ~ 41732989 (-)
LOC110486390 LOC106607189 coding downstream 285948 41665511 ~ 41675898 (-)
LOC110487540 NA coding downstream 311413 41648131 ~ 41650433 (-)
LOC110486400 LOC106601255 coding upstream 45099 42007646 ~ 42015906 (-)
LOC110486406 LOC106607173 coding upstream 247675 42210222 ~ 42291977 (-)
LOC118938459 NA coding upstream 387981 42350528 ~ 42357245 (-)
LOC110486410 LOC106607167 coding upstream 433255 42395802 ~ 42424908 (-)
LOC110486411 LOC106607168 coding upstream 463829 42426376 ~ 42435161 (-)
G1175872 NA non-coding downstream 9095 41952546 ~ 41952751 (-)
G1175868 NA non-coding downstream 12067 41949549 ~ 41949779 (-)
G1175863 NA non-coding downstream 18158 41943468 ~ 41943688 (-)
G1175862 NA non-coding downstream 18941 41942609 ~ 41942905 (-)
G1175861 NA non-coding downstream 20181 41941406 ~ 41941665 (-)
G1175882 NA non-coding upstream 6227 41968774 ~ 41969418 (-)
G1175890 NA non-coding upstream 18874 41981421 ~ 41981691 (-)
G1175892 NA non-coding upstream 20693 41983240 ~ 41983478 (-)
G1175893 NA non-coding upstream 21531 41984078 ~ 41984358 (-)
G1175894 LOC106607178 non-coding upstream 22194 41984741 ~ 41985213 (-)
col5a3a LOC106607203 other downstream 670052 41282052 ~ 41362985 (-)
LOC110486364 LOC106601288 other downstream 1127210 40831402 ~ 40843483 (-)
G1174741 NA other downstream 1504165 40456895 ~ 40457681 (-)
G1174658 NA other downstream 1644987 40316118 ~ 40316859 (-)
G1173645 NA other downstream 2036887 39923922 ~ 39924959 (-)
G1175904 LOC106607178 other upstream 34767 41997314 ~ 41997637 (-)
G1175906 NA other upstream 36805 41999352 ~ 42000091 (-)
G1176164 NA other upstream 365497 42328044 ~ 42328572 (-)
LOC110486413 rbx1 other upstream 490612 42453094 ~ 42456995 (-)
LOC110487542 LOC106607166 other upstream 507155 42469256 ~ 42477053 (-)

Expression


Co-expression Network