G1176037 (LOC106601250)


Basic Information

Item Value
gene id G1176037
gene name LOC106601250
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 42203749 ~ 42206674 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1341083
tgcagaCCAATTTTTTATTGAGTAGATGGTCAGGGGACTGGAACATATTTACAAATATTTGACAAAACAGatgtaatcatttcaaaccttgcatACATTTGTATATGAACACATACTGGATATCTCTTATGCATGGGAATTTTTTGGAACAGACTTCCAAAATTAAAATAACGAAGCAGATTTGCtcatgtttttagttttttatgTCCaaaaaattttattttattttgcgcAGAAAATTTGgtgggccaaataaaatcacccacTAGCCAAATTCGGGACACGGGCCACCAGTTGGAGAAACCTGCTCTAGGGGGATTCTGGTGCTAAATGATGACGTCACAGTATcctctttttaaaaatgttcatCTCCAACCCTCATTCCATGCTGTGGCCCCCAAACATCCACGCTGTAAACCACAATTGATCAAATGTAACCAGTTTCCCTCCCCAGAGCAACCCCCAAATCCCTCAAGTGTTGACAACTTAAAATTGAGCATTTCAGAATCCCTAATACAGCAGATCGGGGCTGACTGGTCTACAATCCCTCTACCATGGAGGGTTTTCCATTCAACAGCACCAGTCAGGCCACCATAAGGGCAAAAAGTCAAAGAGGAGGATATACTGGACAGAAACTGCCTGTCCGCCCccaccacaaacacacaaacaggagaagtgagagagaagCAAATCTTGAATGTATGTTTGTGGTGATATGCAACAAACCATGAAAAGGATAATACATTCAAACAAGCAAGCGATGCTCAAAATTGAGCATGTGCACATGTGTGGGTGCAGTGTTGTGCGAGTCTGAGGCCGTGCAAATGCAGactatcacatccagccgtgattgggagtcccatagggcggcacacaattggcccagcgtcgtccgggtttggccgggaaACAATTTGTtattaaatgacttgcctagtaaaataaggttcaataaaatacaaAATTGTTTTTCTAACTCCGGATACTGTCAAGTCAAAAAAATAACTGCATTATAATACATTTTCAGTGTCTAAATTGGTATATTACAGCAAGAATTTATAGGGAGGACTTTATTAAAAAATGGTTTGGCAAAGGTACTGATACAgtacatattaataataatacagtCACGATGTTAAGGGGCACCCAAAATAACAACACAGCATTTGTGATTCACCAATGCGGCTCCTGGTTCAGTAGGCATCACTATAATTGATGGAGTGGACTACAGTATACACGAAACACGTCATCTCCGCATACTTAATTGCTTATATAGGTTCAAATGAAACAAACATTCCCATCTTTGCGATCTCTTAACCATAACTTACTTTAGCTACAGTACTGGCTGACATATAGTTCTGTGCGTCTATGAAAATGAACCTACGTCCAAGGGAGATCAAGTACACTACGTAGCAGCAATACCTCTGTTAAAAAAAGCAGGTTCTCCTTTTTATCAAATATATCAAATCCTATCACGTCTGTCATAATGTTCTATAGCAATATCATTAAAGCTAAGAGGGTAAGACCACGTGTTCTAAAACATGAAATCATGTTTCCTGGCATTTTCAAATATATTCCAAACTACACCCCATATTATGGGAAAAAATATATCATAGTCAAAtgtcactgtctgtgtgtctctcctctgtaCCGGGCTCCTGCTGCAGTTCTCCTACTCAGTCAGAGCTGCTGTCACCAGACTGCTACACTGGAGCCACGGTCTGACACCTGCATGCATTCATGCTAACAAATAGCTACTTGATTCTCCTTCACCTTGGCTTCCCTGATCATCTCCTCTAAAGTTCTCATGAAAATAAGtaggttgtgtttttttttttttttttttttaccctaaaGCTGCTAGACAGATGTGATTATCGTCTTGTTCTCACATTACTGGTTCAACATTGTTACAATATCGCCATACTATTACTAATACTACTAAGGGCAATAATAAACGTAGACAATAGTCTAGATGGGTGGCTACGGTAAGCTGCTGACTGGCTCAGATGAAGGAGCATCATCAACTACAGTCCGCAGGGTTTGTTAACAAAGGTATTACTGTATGAGCTACGTGTGTAAGAGGGCCTGCCTTATAGAACGTATGGGTATACATAAGAAATCTATCAAAGTGTTATTCAGTAAGAGGGACTGAGTTCAGCGTGCAGTAGAGCCCGTGTGTTTTTGAGTCGTTGTACCGTACgttgagaaaagagagaaagagtttgACAACGTAACATCAGCATCCTGCCGTGTGGATGACACTAAAACTGTCCAGGGCTATAAGCAGGAGTCCCAGTGGAGCTGCAGGTCTGAACTGTCCAGAAAGTCTGCTGAGAAGACGCTGGGGGGAGTGTGGGGGCCCAGGGGACCCAGTGGGGCGAGCCCTGCAATCTCGTTGCTCGCCCCTCCCATGGTGATATCCAGCCAATCCATGCTGTCCAGGGCATGGTCTCCGAAGTCCAGGCCAGGGGGGTTGGCTGTGTAGCCCGACAGCTCATAGGTGTCCATGGGCGAGGATGTGTGGTCCAGGATGCTGGGGGTGCTTAGCATTTGATTGTGAAGGTCGTCAATCAGGGTCAGGGGCCCGCCAGGCTCCACCCCCAGGAGGGGTTTGCCCGTGGTGCTCTCCAGGAAGTCCTCCAGACGTCCACTTCCTGTGTTGCTTACGTCCTGATCATCGGTGGCTGGCGCctgcagctcctcctcctccccttggCCTGGCTGGGGGGTCTCGGGTTCGGGAGGGGTGGAGGGCGAGAAGTGGAGTTGCagctggagaggggagggggcctGAGAGTGGGAAGGGGAAGGGGTGTTGGGGCGCAGTCGTGCCAGGGAAGGGT

Function

NR:

description
MKL/myocardin-like protein 1 isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1341083 True 2846 lncRNA 0.45 2 42203749 42206674

Neighbor

gene id symbol gene type direction distance location
LOC110486400 LOC106601255 coding downstream 187843 42007646 ~ 42015906 (-)
LOC110487541 LOC106607111 coding downstream 339940 41862761 ~ 41863809 (-)
LOC110486396 LOC106601258 coding downstream 346123 41776509 ~ 41857626 (-)
rl23 rl23 coding downstream 470760 41730039 ~ 41732989 (-)
LOC110486390 LOC106607189 coding downstream 527851 41665511 ~ 41675898 (-)
LOC110486406 LOC106607173 coding upstream 3548 42210222 ~ 42291977 (-)
LOC118938459 NA coding upstream 143854 42350528 ~ 42357245 (-)
LOC110486410 LOC106607167 coding upstream 189128 42395802 ~ 42424908 (-)
LOC110486411 LOC106607168 coding upstream 219702 42426376 ~ 42435161 (-)
LOC110486413 rbx1 coding upstream 246420 42453094 ~ 42456995 (-)
G1175927 NA non-coding downstream 167239 42036265 ~ 42036510 (-)
G1175917 NA non-coding downstream 181968 42021546 ~ 42021781 (-)
G1175913 NA non-coding downstream 186721 42016753 ~ 42017028 (-)
G1175912 NA non-coding downstream 187567 42015966 ~ 42016182 (-)
G1175907 NA non-coding downstream 202532 42000198 ~ 42001217 (-)
G1176101 NA non-coding upstream 10854 42217528 ~ 42217752 (-)
G1176109 NA non-coding upstream 22912 42229586 ~ 42230005 (-)
G1176125 NA non-coding upstream 48001 42254675 ~ 42254905 (-)
G1176126 NA non-coding upstream 49653 42256327 ~ 42256538 (-)
G1176130 NA non-coding upstream 56046 42262720 ~ 42262954 (-)
G1175906 NA other downstream 203658 41999352 ~ 42000091 (-)
G1175904 LOC106607178 other downstream 206112 41997314 ~ 41997637 (-)
col5a3a LOC106607203 other downstream 911955 41282052 ~ 41362985 (-)
LOC110486364 LOC106601288 other downstream 1369113 40831402 ~ 40843483 (-)
G1174741 NA other downstream 1746068 40456895 ~ 40457681 (-)
G1176164 NA other upstream 121370 42328044 ~ 42328572 (-)
LOC110487542 LOC106607166 other upstream 263028 42469256 ~ 42477053 (-)
G1176749 NA other upstream 283884 42490558 ~ 42491172 (-)
LOC110486438 LOC106601158 other upstream 595770 42801570 ~ 42809120 (-)

Expression


Co-expression Network