G1176084 (LOC106607173)


Basic Information

Item Value
gene id G1176084
gene name LOC106607173
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 42289091 ~ 42291866 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1341137
ACCTCTGCTCTTCTCCAGGCCCAACTTGGTGAAGATGCCCACCAGCACCATAATGGCCACCACGCCACAGATGATGTAGACGATCATGTGGGTGCGGTCTCGGTCGGGCTCCTCCTGCACCTCAGTGACGGGGGCTGCCGGCTTGCCGGTGTTGGCCCAGACGGGCGTGTCGTAGTTGGAGCAGGACTCCTGCTCCAGGCTGTGCACCTTGAACTGGCAGCAGAAGCGGTAAAAGCAGGAGCCGCAACAGAACAGGTAGACGCCAGCATTGCAGTTGAACGGTGGGTCCCATTGGCCCATGACGTCGTAGTAGCCCCGGCAGCGGCTGCCTATCATCGGGATGGTCTGGTCCTCCGCTACCGGAGTGGCCAGCGTAGCCTCCAGAGAATTAGAGGTGGCTGCCGTCTGGTTGGTGGCCTGGGCATCGGCCCCAGCCTCCCTAGAGTTCTGGCCCAGTGAAGTGAAGCCCAGCAGAAGGCTGAAGGCGAGGCAGATGAGCACAGAATGGGCAGCCATGTTTGATACCTGTGGATGCTGCTTCTGTTCAGTTGCTGAAGTGTCTCAAAGCTGGTGCAGGCCAATTAACACCAACTTCAGAAACGCAGGCTTCTTTACTGGCCAAAAAAAACTGACATGGAAAAATAGCCTTTTCGGTATTTCATACACTAGAGATTTGAAAAGGAGTTGAGAGCTTATGGATTAGCCTATATTCATAGCAGCTGCCTGAAAGAATAAGAGCTTTCAATTACCTTGCTGAGAGTTATTACGACACTCAGGTACAGGAGGCTCAGTGTGAAGTAATAAATTGCCATCAAGAAGGGGGATGAGCAAGTAAGTGAAACAAACTAACCTCGAATCTCAACCTGCTCCTCACGAATGAGTCCCCAGTGATTCAGTCCCAGACTCAGACACACAGTTCTGGCAGCGTTGCAAAAATACCGCCCTTTTCTGCCAAATGTCAATAGCAGATGTGATCTGAAATCTGGAGCACCTCCAGTTTAGGAGGTGTCACCCAGAAATGAACTGGCCCGTGACATTTAAAAGAAATCTCACCACAATAGGAAAAATGTTATCCGTAAACCAGAGAGATTTGGAATCCCAACAGCGCCAGCAGAAAAGCAGATTCCTCAAGGCTCCAAGCTCCTTTCTGTAAACGTCTTCATTTAGGAGAGGGACACACAGATTTTAATAATTGCCCTGCCAAGCATTAATCAATGCTGAAGTGGGGGAAACGACAAAGCACTGGAACTTCTAGATAATCCACTTGTCATAATCTATAAATATGGGAGTTGTTGATATTCCCCTCTCAGATTATCTTGCCTCTAGCAACTGCCTGGTCTCCACCTGAATGTTCATTTGATTCTTTGTTATTTTTCTTGTAGACATTTTGAATCCCTTTGCTAAGTGAAACATGATGCTCTCATTCCTTTCCTTTCCAGATGTGCAATTCCAGTTAGATACTATTCTACAATTGGTCTTCAATATTGTATTATGCCCAGAAAAAAAAGGTATGTGGGTTTTTGTTTCCACCCCCTCCAGTGAAAGCACAGTCTGTAGTTCTTCAATATTGTCCTACGAGATCTAAACTGAAATGATGATTTAGTCCAGACTTAAAAGCAGTCCTCAGCACCTGAGGCAGGCAGCCTTTAtcccacacgctcacacacacatgcacacactctcacagacacacacacacacacacacgttcaaatCCATAGGCGACAGCGCTCCGTCAGTGTCAGTTTGGCTTAATGGGTTTAGAGGGATGGGGGTCCAGTCACTCTCTGTTGTTGTGGGTTTCTCTTGGTGCTGTCGGTTCGGCTCCACACCACACCTGAGAGGGAACCTAAAAGGATGGGGTCACCAATACAGCTCTGCTGCCAGACAACTACAACCCCACAAGTGCTACCAAGCAGGGGATAGGGGAATGACAAGGGCAGCGTGCTGAACAATCCCCCCAGCCTGTGGAGTCTAGTCCAGTCCTCCCTAGTCTAAATTTATGAGAAGCTCACTTTTGAGCGAACATGTGGTGTAATTACATTTCTACGTAGTGTCCCACTTCTTTACTGTAGTCCCTTCCTTGTTTTCCTTGTCTTTGTTTATTTACCACGACTCCATAATCCCTCTCTGCTGCTTTTTGTTGTTTCTTGCTCTCTGCTTTCTTCTGTCTTCCTCActtacctctccctctttcaGACACAACTAAAGAGCAGGCTTTCTGCCGCGTTACTGCTGTGAATACAGGAGGGTATTACTGAGCCTGTGGACTGCGGTCCATGCAACACACCCAAGCCTCAACTCCCCAGCCTGTTCCAAGGGCAGGATAACTGGAGAGGCGACAACAAAAGGCAATGCAAAATCCTGTTTTCAAGAAGCCTTCAAAAATGGGACTGCAGCAAagctgtttgtgttgtttgtggtCTTTTATCACGCTCATTTGCAAAAAGCATTAATATGCAACAGTTTTACCAAATGCTGCACATTAAAGCAGTCTTCCAATTGTTATGCAAGGGACCTCAACACAGTCCTTCCCCCAAAGCAGCTTCTGTGAAAACAGGCATAATTTGATATATATGTATAGGAATTTTAGATATATATCACATGTATGTGTTTTCTCTGTTTCTTTGCTTATGGAATTCTCCAACAGAAATTGGATGAAACAGGATAACCAACAGCAGTAGGATGCTTTTTTTCATTCCATCCCCTCTTTGTTTTTCTTCAGACGTGTATTCCTCTGTTTCCCTTGTCCCTCGCACAGAGCTTCTTTATCCCG

Function

NR:

description
protein shisa-9-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1341137 True 2776 TUCP 0.47 1 42289091 42291866

Neighbor

gene id symbol gene type direction distance location
LOC110486405 LOC106601250 coding upstream 84324 42163188 ~ 42204767 (+)
LOC110486404 LOC106601293 coding upstream 130893 42155174 ~ 42158198 (+)
LOC110486402 LOC106607175 coding upstream 146888 42133629 ~ 42142203 (+)
hdac5 LOC106607176 coding upstream 156013 42047390 ~ 42133078 (+)
tanc2a LOC106607178 coding upstream 280507 41871648 ~ 42008584 (+)
LOC110486408 LOC106601246 coding downstream 85428 42377294 ~ 42395739 (+)
LOC110486412 f10a1 coding downstream 143379 42435245 ~ 42442043 (+)
LOC110486415 LOC106607163 coding downstream 202222 42494088 ~ 42508373 (+)
LOC110486416 LOC106601241 coding downstream 232010 42523876 ~ 42528284 (+)
LOC110486418 LOC106607160 coding downstream 253086 42544952 ~ 42556105 (+)
G1176079 NA non-coding upstream 8800 42280011 ~ 42280291 (+)
G1176070 NA non-coding upstream 22446 42266336 ~ 42266645 (+)
G1176062 NA non-coding upstream 35878 42253007 ~ 42253213 (+)
G1175737 NA non-coding upstream 247002 42041817 ~ 42042089 (+)
G1176089 NA non-coding downstream 18422 42310288 ~ 42311729 (+)
G1176175 NA non-coding downstream 49592 42341458 ~ 42341722 (+)
G1176218 NA non-coding downstream 117623 42409489 ~ 42410629 (+)
G1176220 LOC106607167 non-coding downstream 119031 42410897 ~ 42411376 (+)
G1176221 LOC106607167 non-coding downstream 120181 42412047 ~ 42414162 (+)
G1175667 NA other upstream 362435 41926275 ~ 41926656 (+)
G1175346 NA other upstream 429748 41857189 ~ 41859343 (+)
G1175317 LOC106601258 other upstream 494284 41794360 ~ 41794807 (+)
LOC110486395 ccd56 other upstream 512111 41773456 ~ 41777013 (+)
G1175164 NA other upstream 748411 41539491 ~ 41540680 (+)
G1176278 LOC106607164 other downstream 190511 42482377 ~ 42484520 (+)
LOC110486430 LOC106601228 other downstream 434136 42725254 ~ 42734581 (+)
LOC110486447 LOC106607129 other downstream 673627 42963102 ~ 42990476 (+)
LOC110485182 LOC106607095 other downstream 967309 43259175 ~ 43265600 (+)
LOC110486464 mgp other downstream 1105883 43397744 ~ 43402308 (+)

Expression


Co-expression Network