G1176972 (LOC106607127)


Basic Information

Item Value
gene id G1176972
gene name LOC106607127
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 43039174 ~ 43049544 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1342190
CCCAAACAAGCCAGTCCAACATGGCGTCGTTGTCTTCACCTCTACGCCTTTGCCGGGGGATCCTGAGGGAGATACGAGCGATTAAAGGACCGGAATACAAACAATCTTTGGCATACAATTATGTTTTAGACCAATTCCGTAAAAACCAGatcACTGGGGAGAGATATTGTCGTGCTCAGGAGGAGGCCCTCCATGCTTCGCACAGCTACCTCTGTCTGCTCACCTCCACCCGGCAACACATTGCTCTCTACGACATGTACCATGGGAAAGGGCAGcgtgacacagaggagatggcAGGAATTGTGGGGCTCAGGCTGCCCACCCAGCCTGGAGGGAAGGGCTGGGAGAAGTGAGAGAAGGGATGGGAGAAGACTCTCGTACAACATCAGAGGGTTGTAAATCATCACGCTGGACCTAATGCTATTTTGATCTTTCACAAAACAGAGGAAGAGATGAAGGCTGCAACGAACAAGGACTGTGAATTGTGATTATACAAGGGAGGATCAAAGCTATTAGAAATATGTGATTCCCAGCTTTCCCCACCACTCCTCACTTTGTCTGTCTTGAGACGATGGCTGTAATTTAAAATCTTTGTAAATACAATGGGACAAATTCTGCCAATTAAAGTATTAATCACTTTTATCGGGTCACCATGACATCGCACTTTTCTTGCAATGTGTATGCTGCTAATTATCTGCTAATAAAACATAACCAATTAAATAATGATATCCCTTTTAACCTCAATTCAGTAAGGTTTACTTGGAGCAACGTATGATGTTCAGGTAAAGCACTAATACTCGGCAGATAAAACCGATGATAACGAACTCAGTCCTATGTATATTTTAAAGGACATCAGGCAATTTAAAATTCCTGGTTAATTAAAATATTAAGCATTACAAAGAGGGTATGATAAATCAGATGGATGGATCATTGCGTGGCCTTTGATATTTTACATGTTTTGTTCTTCACTACCCTTTGGCCAGTGGTTTAaacagtgtgaagaccagccaacagtGAAATGAAGGAAAGGTCTTAGATAATGCTAGGGCATGCAACATAAGAGAAGTATAACAATATGCTTTATTTTGTCTCATGTGGGCGTTTTATAAGGGTATTACCAGCACAATGGAAAACAGCAGATAGGAGTTGTATTGCTTTGTACTGGCAGATTAATTTGTTTCATTGTGTCCATGGCAACTGGCATTTCTACCAACCACTACATTTTTCTCTGCAGTCTTTTGCCATTTTTTTTTATAGAGTAACATGTATTAGCTTCTGGGAACTGTTTTTTTCGTTCTTTGCCCTTTGCTATGTTTTCATCCTGGATTATTGTTAAAAAAAGAAAGCCTCGTCGTTAACTGTGCCCCTATTGGACTTCATTCTCTTCTATTCATCCCCTTTTCTTAGTTAAATCTATGTATCTGCGTAACTCTCCCCATTCCATTTGTTACACGGTGACTAAGATTGTCTTCTGTGTGGGTTGAAATAGATTGACCCTAGAGCTAAGCAGCACACTGTGACACATCGGGACAAGAAATATGCTTGCACATGCGCGGCAGCACCCACCGTCCACATGCATGCAGTGGGAATGTAATGCATAGTGGCACACCAACAGATAGCGTCAAATTATATTGTTATAAAGTCGCAAAATAACACGCGTCTCTACACCCCATTCCTGCA
>TU1342192
CCCAAACAAGCCAGTCCAACATGGCGTCGTTGTCTTCACCTCTACGCCTTTGCCGGGGGATCCTGAGGGAGATACGAGCGATTAAAGGACCGGAATACAAACAATCTTTGGCATACAATTATGTTTTAGACCAATTCCGTAAAAACCAGatcACTGGGGAGAGATATTGTCGTGCTCAGGAGGAGGCCCTCCATGCTTCGCACAGCTACCTCTGTCTGCTCACCTCCACCCGGCAACACATTGCTCTCTACGACATGTACCATGGGAAAGGGCAGcgtgacacagaggagatggcAGGAATTGTGGGGCTCAGGCTGCCCACCCAGCCTGGAGGGAAGGGCTGGGAGAAGTGAGAGAAGGGATGGGAGAAGACTCTCGTACAACATCAGAGGGTTGTAAATCATCACGCTGGACCTAATGCTATTTTGATCTTTCACAAAACAGAGGAAGAGATGAAGGCTGCAACGAACAAGGACTGTGAATTGTGATTATACAAGGGAGGATCAAAGCTATTAGAAATATGTGATTCCCAGCTTTCCCCACCACTCCTCACTTTGTCTGTCTTGAGACGATGGCTGTAATTTAAAATCTTTGTAAATACAATGGGACAAATTCTGCCAATTAAAGTATTAATCACTTTTATCGGGTCACCATGACATCGCACTTTTCTTGCAATGTGTATGCTGCTAATTATCTGCTAATAAAACATAACCAATTAAATAATGATATCCCTTTTAACCTCAATTCAGTAAGGTTTACTTGGAGCAACGTATGATGTTCAGGTAAAGCACTAATACTCGGCAGATAAAACCGATGATAACGAACTCAGTCCTATGTATATTTTAAAGGACATCAGGCAATTTAAAATTCCTGGTTAATTAAAATATTAAGCATTACAAAGAGGGTATGATAAATCAGATGGATGGATCATTGCGTGGCCTTTGATATTTTACATGTTTTGTTCTTCACTACCCTTTGGCCAGTGGTTTAaacagtgtgaagaccagccaacagtGAAATGAAGGAAAGGTCTTAGATAATGCTAGGGCATGCAACATAAGAGAAGTATAACAATATGCTTTATTTTGTCTCATGTGGGCGTTTTATAAGGGTATTACCAGCACAATGGAAAACAGCAGATAGGAGTTGTATTGCTTTGTACTGGCAGATTAATTTGTTTCATTGTGTCCATGGCAACTGGCATTTCTACCAACCACTACATTTTTCTCTGCAGTCTTTTGCCATTTTTTTTTATAGAGTAACATGTATTAGCTTCTGGGAACTGTTTTTTTCGTTCTTTGCCCTTTGCTATGTTTTCATCCTGGATTATTGTTAAAAAAAGAAAGCCTCGTCGTTAACTGTGCCCCTATTGGACTTCATTCTCTTCTATTCATCCCCTTTTCTTAGTTAAATCTATGTATCTGCGTAACTCTCCCCATTCCATTTGTTACACGGTGACTAAGATTGTCTTCTGTGTGGGTTGAAATAGATTGACCCTAGAGCTAAGCAGCACACTGTGACACATCGGGACAAGAAATATGCTTGCACATGCGCGGCAGCACCCACCGTCCACATGCATGCAGTGGGAATGTAATGCATAGTGGCACACCAACA
>TU1342194
CCCAAACAAGCCAGTCCAACATGGCGTCGTTGTCTTCACCTCTACGCCTTTGCCGGGGGATCCTGAGGGAGATACGAGCGATTAAAGGACCGGAATACAAACAATCTTTGGCATACAATTATGTTTTAGACCAATTCCGTAAAAACCAGatcACTGGGGAGAGATATTGTCGTGCTCAGGAGGAGGCCCTCCATGCTTCGCACAGCTACCTCTGTCTGCTCACCTCCACCCGGCAACACATTGCTCTCTACGACATGTACCATGGGAAAGGGCAGcgtgacacagaggagatggcAGGAATTGTGGGGCTCAGGCTGCCCACCCAGCCTGGAGGGAAGGGCTGGGAGAAGTGAGAGAAGGGATGGGAGAAGACTCTCGTACAACATCAGAGGGTTGTAAATCATCACGCTGGACCTAATGCTATTTTGATCTTTCACAAAACAGAGGAAGAGATGAAGGCTGCAACGAACAAGGACTGTGAATTGTGATTATACAAGGGAGGATCAAAGCTATTAGAAATATGTGATTCCCAGCTTTCCCCACCACTCCTCACTTTGTCTGTCTTGAGACGATGGCTGTAATTTAAAATCTTTGTAAATACAATGGGACAAATTCTGCCAATTAAAGTATTAATCACTTTTATCGGGTCACCATGACATCGCACTTTTCTTGCAATGTGTATGCTGCTAATTATCTGCTAATAAAACATAACCAATTAAATAATGATATCCCTTTTAACCTCAATTCAGTAAGGTTTACTTGGAGCAACGTATGATGTTCAGGTAAAGCACTAATACTCGGCAGATAAAACCGATGATAACGAACTCAGTCCTATGTATATTTTAAAGGACATCAGGCAATTTAAAATTCCTGGTTAATTAAAATATTAAGCATTACAAAGAGGGTATGATAAATCAGATGGATGGATCATTGCGTGGCCTTTGATATTTTACATGTTTTGTTCTTCACTACCCTTTGGCCAGTGGTTTAaacagtgtgaagaccagccaacagtGAAATGAAGGAAAGGTCTTAGATAATGCTAGGGCATGCAACATAAGAGAAGTATAACAATATGCTTTATTTTGTCTCATGTGGGCGTTTTATAAGGGTATTACCAGCACAATGGAAAACAGCAGATAGGAGTTGTATTGCTTTGTACTGGCAGATTAATTTGTTTCATTGTGTCCATGGCAACTGGCATTTCTACCAACCACTACATTTTTCTCTGCAGTCTTTTGCCATTTTTTTTTATAGAGTAACATGTATTAGCTTCTGGGA
>TU1342193
CCCAAACAAGCCAGTCCAACATGGCGTCGTTGTCTTCACCTCTACGCCTTTGCCGGGGGATCCTGAGGGAGATACGAGCGATTAAAGGACCGGAATACAAACAATCTTTGGCATACAATTATGTTTTAGACCAATTCCGTAAAAACCAGatcACTGGGGAGAGATATTGTCGTGCTCAGGAGGAGGCCCTCCATGCTTCGCACAGCTACCTCTGTCTGCTCACCTCCACCCGGCAACACATTGCTCTCTACGACATGTACCATGGGAAAGGGCAGcgtgacacagaggagatggcAGGAATTGTGGGGCTCAGGCTGCCCACCCAGCCTGGAGGGAAGGGCTGGGAGAAGTGAGAGAAGGGATGGGAGAAGACTCTCGTACAACATCAGAGGGTTGTAAATCATCACGCTGGACCTAATGCTATTTTGATCTTTCACAAAACAGAGGAAGAGATGAAGGCTGCAACGAACAAGGACTGTGAATTGTGATTATACAAGGGAGGATCAAAGCTATTAGAAATATGTGATTCCCAGCTTTCCCCACCACTCCTCACTTTGTCTGTCTTGAGACGATGGCTGTAATTTAAAATCTTTGTAAATACAATGGGACAAATTCTGCCAATTAAAGTATTAATCACTTTTATCGGGTCACCATGACATCGCACTTTTCTTGCAATGTGTATGCTGCTAATTATCTGCTAATAAAACATAACCAATTAAATAATGATATCCCTTTTAACCTCAATTCAGTAAGGTTTACTTGGAGCAACGTATGATGTTCAGGTAAAGCACTAATACTCGGCAGATAAAACCGATGATAACGAACTCAGTCCTATGTATATTTTAAAGGACATCAGGCAATTTAAAATTCCTGGTTAATTAAAATATTAAGCATTACAAAGAGGGTATGATAAATCAGATGGATGGATCATTGCGTGGCCTTTGATATTTTACATGTTTTGTTCTTCACTACCCTTTGGCCAGTGGTTTAaacagtgtgaagaccagccaacagtGAAATGAAGGAAAGGTCTTAGATAATGCTAGGGCATGCAACATAAGAGAAGTATAACAATATGCTTTATTTTGTCTCATGTGGGCGTTTTATAAGGGTA

Function

NR:

description
PREDICTED: UPF0562 protein C7orf55 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1342190 False 1680 TUCP 0.42 2 43039174 43049544
TU1342192 False 1614 TUCP 0.42 2 43039240 43049544
TU1342194 False 1281 TUCP 0.42 2 43039573 43049544
TU1342193 True 1114 TUCP 0.42 2 43039740 43049544

Neighbor

gene id symbol gene type direction distance location
LOC110486451 LOC106607121 coding downstream 13465 43019077 ~ 43025709 (-)
LOC118938563 NA coding downstream 27520 43011500 ~ 43011654 (-)
fam234b LOC106607128 coding downstream 36021 42993642 ~ 43003153 (-)
LOC110486441 LOC106607136 coding downstream 158336 42870902 ~ 42880838 (-)
LOC110486439 LOC106601217 coding downstream 170099 42866847 ~ 42869075 (-)
LOC118938293 LOC106562616 coding upstream 4125 43053669 ~ 43065887 (-)
LOC110486458 LOC106601205 coding upstream 216235 43265779 ~ 43272054 (-)
LOC110486460 LOC106607104 coding upstream 236212 43285756 ~ 43297849 (-)
LOC110486463 LOC106607099 coding upstream 297234 43346778 ~ 43353148 (-)
LOC110487544 NA coding upstream 306185 43355729 ~ 43362239 (-)
G1177033 NA non-coding downstream 20831 43018091 ~ 43018343 (-)
G1177029 NA non-coding downstream 29801 43009040 ~ 43009373 (-)
G1177028 NA non-coding downstream 31105 43007790 ~ 43008069 (-)
G1177039 NA non-coding upstream 852 43050396 ~ 43050602 (-)
G1177040 NA non-coding upstream 1947 43051491 ~ 43051871 (-)
G1177056 NA non-coding upstream 19538 43069082 ~ 43069560 (-)
G1177063 LOC106601209 non-coding upstream 28338 43077882 ~ 43079581 (-)
G1177027 NA other downstream 31416 43007379 ~ 43007758 (-)
G1177025 NA other downstream 31850 43004756 ~ 43007324 (-)
LOC110486438 LOC106601158 other downstream 230094 42801570 ~ 42809120 (-)
G1176749 NA other downstream 548002 42490558 ~ 42491172 (-)
LOC110487542 LOC106607166 other downstream 567196 42469256 ~ 42477053 (-)
G1177047 NA other upstream 9886 43059430 ~ 43076353 (-)
G1177175 NA other upstream 302957 43352501 ~ 43362354 (-)
G1177238 LOC106607096 other upstream 364615 43414159 ~ 43415103 (-)
G1177552 NA other upstream 551819 43601363 ~ 43647736 (-)
G1177709 LOC106601291 other upstream 923995 43973539 ~ 43974057 (-)

Expression


Co-expression Network