G1177063 (LOC106601209)


Basic Information

Item Value
gene id G1177063
gene name LOC106601209
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 43077882 ~ 43079581 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1342295
TAAACATTTTAATGAACAATTACAAGTCTGAATATTTCTTGGTACTTAACCTTTCGGTCAATCTGTTGTCAAGTCCAATGCATTTATTTACATGTTTGTAACCAGCCATTAAGGCGATCAGCAGACAGTGTGTGAATTACATTGGGTCCAGGGGGACCCCTGAATTGAGACAGGAGTCCCCCTAAATGCGGGGTCTCTAAATAATACTAATTGAACAATTATAATATTTCTTTAAAATGCTATTTGTAGTACGACAGAggtaaatattaaaataaaacGAACACCCCCGCCggtcatggtttaatatatatatatatatccacgtGGTTGCACTTGTCATCCCGGGACAGTCCCATCTCTCAGCCCCTTTTCAGGCGTCCCAACTTTTCGTTCTACAAAACAGGTCCTTTTGTCAAAGACGCATCAATTAATTCAGGCTACAAGAGTGTAGACCTAATGAAAATCACAGAATGTCATTACAATTTTTGGTGTTTCGTAACGGATGTCTCTTCCCATTCATCTACCTGAGCAGGAGGAAAAGAGAGGTCACATAGGCTTTGGCAGGTTCATGTCTCATTTCAGGTTTGATTTTCAAATCCTCTCGTCCTGTGTCAAAGACACCATTTTGGTACAATGCTGCACCCATGTGGTCAAACACACGGCAGGCAGACAGTGATCACATGGGGCCAACCCATTTCACCAGGATGGGCAACAACATTTTCCAGTAACATTCCAATGATAAGTCACTCTTGTAAACACCTGGGCTCAAATATGATTTGAGTGCAAAATTCTGATAAAAAAATACCTTGGTTaccagaagaaaaaaagaaaaaatctaCAGAATCAATATTCCTCCTCGTTTTGACTTGACACAACAAATTAACTTAAATCTTAACATTTGGTTAAATTGGAGTTTTCGGGGACGTTAAGACGTCAGTGCACTGAGGCTCACAGAAAGGTCCAAAGCGGCCAAACACGTCCCTGGCACGGACTGCAAAGTAGTACTTGGAACCAGAGACAAACTGTGTGAGTGTACAGGCCATGGGCAAAGCCAAGGCCTTCACCTCCCCGATCTTCTTCCAGAGTAGGGGGTGTGTGCTGGGGCCAGAGTGGTCCTGGTGGTAGGCGTATAGGTGGTAGCTGTCCACGGCAGCACAGCTCCTGTCTACCTCAGTCACAGACCAGGAGAGCACGATGCCGTCATTCTGGCTCGGAACGCGGGTTATTTTGAGCAGAGGCTGCTGTGGAGGGCTGGTGCTGGCCGCTTCGAGGGGCAGGCTGATAGTTTGAGGTGGGACAGGCaaggggggaaggggagagggctgGGGGCATGGTATGGAAGATGAAGAAGTGGTTGTTGCGGAGGCAACACTTTCAGATG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1342295 True 1381 lncRNA 0.45 3 43077882 43079581

Neighbor

gene id symbol gene type direction distance location
LOC118938293 LOC106562616 coding downstream 11995 43053669 ~ 43065887 (-)
fmc1 LOC106607127 coding downstream 28133 43039494 ~ 43049749 (-)
LOC110486454 LOC106607126 coding downstream 38673 43032510 ~ 43039209 (-)
LOC110486451 LOC106607121 coding downstream 52173 43019077 ~ 43025709 (-)
LOC118938563 NA coding downstream 66228 43011500 ~ 43011654 (-)
LOC110486458 LOC106601205 coding upstream 186198 43265779 ~ 43272054 (-)
LOC110486460 LOC106607104 coding upstream 206175 43285756 ~ 43297849 (-)
LOC110486463 LOC106607099 coding upstream 267197 43346778 ~ 43353148 (-)
LOC110487544 NA coding upstream 276148 43355729 ~ 43362239 (-)
LOC118938297 LOC106596055 coding upstream 406101 43485682 ~ 43487100 (-)
G1177056 NA non-coding downstream 8322 43069082 ~ 43069560 (-)
G1177040 NA non-coding downstream 26011 43051491 ~ 43051871 (-)
G1177039 NA non-coding downstream 27280 43050396 ~ 43050602 (-)
G1177064 NA non-coding upstream 598 43080179 ~ 43080537 (-)
G1177068 NA non-coding upstream 5571 43085152 ~ 43085385 (-)
G1177071 NA non-coding upstream 8207 43087788 ~ 43088088 (-)
G1177076 NA non-coding upstream 14101 43093682 ~ 43093889 (-)
G1177120 grin2b non-coding upstream 133536 43213117 ~ 43219367 (-)
G1177047 NA other downstream 1529 43059430 ~ 43076353 (-)
G1176972 LOC106607127 other downstream 28338 43039174 ~ 43049544 (-)
G1177027 NA other downstream 70124 43007379 ~ 43007758 (-)
G1177025 NA other downstream 70558 43004756 ~ 43007324 (-)
LOC110486438 LOC106601158 other downstream 268802 42801570 ~ 42809120 (-)
G1177175 NA other upstream 272920 43352501 ~ 43362354 (-)
G1177238 LOC106607096 other upstream 334578 43414159 ~ 43415103 (-)
G1177552 NA other upstream 521782 43601363 ~ 43647736 (-)
G1177709 LOC106601291 other upstream 893958 43973539 ~ 43974057 (-)
zgc:158403 LOC106601368 other upstream 897566 43977147 ~ 43992248 (-)

Expression


Co-expression Network