G1177120 (grin2b)


Basic Information

Item Value
gene id G1177120
gene name grin2b
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 43213117 ~ 43219367 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1342357
CAACACGTAATTTTTGTTCATCATGTACAAAGAGAAATAAGTCATGTTTTAGCACTTATCGTTGAAGATATCAGTATTATCCTTATTAGAGGTACCATGAtgattttttttgtgcaaatatCCAATGACTTTATTCATTTGTTATTGTGGTTAATTTAATCATTTCCATACAAAAAAAAATTTAAGgaatgagtttaaatgttttctcAAATATTCATATTTACACAATCTGTACAATTCTTTATTTGTATATAATTTTCTGTTTGTATAATGGTGTAAAAATGGTGTAACATTTCAAAGAAAGGGCCACAAAAGGAGAAATAATGGCCCACAATAATATGTATACAGTTGATACTATTCATGTTACATTTCACCTACTCATGGTTAATTCAATCAGGATATTCAGCTTCGGTAAAGAAAGATCACAAACTTGCCCTAAAACGCAGGCTGTCTGTACACACTCTCAGCAAtgaatattttttataaaatacattttgcaacAACCCCTTAACCAATGTTACCCACATTTACTATAACATGTGTCCTGTTATGAATCTTAATCATGAAGACAAAAGAAAATCTAACCGTTGTACAGGTTATATGCTGAAATAAACACGCGCCCACAACTGATCAACCATTCGAgcatacacacaaaaacacacacagtgcacCACTTTCATTCAATCTACAAGAAATGAGAGCGCAACAAAAAAGGCATCAAGTTGCAATGTTAACCCTTAATAGGCCTGTAACCAATCACTGTGTTCACAATGTAATAATTGTAATACTATTACTATCAACGTTTATATTGTTATACAAATGAAATAGTTCAAAAACTGTAAGTCCTTTTCATCAATAGGCAAAATATTATAATAAAAACACAATGGAACCAGTGTTGTTTATTCAACTTTGAAATACAGGAATAAACCAGTGTTGTAGATGTAGTGATGTTTGTTATCATATTAGATCAATGTGTTCCAGCTGGAGTATCCACCCAATAGCATCGGCCTGTTCTACAGTCCACTACCATGGCAGAGCATTTCCTTGCTTTGGCTGATGTGACATTGCATTTAGCTTCATACCCCATTTAAACAAATGTGTATGTGTACTGACATGCTTGTGCAGAGTGGAACTGGGACCACAAGGCCTTGGGGGAAAAAAACCCTGCTGGCTGTTTCTCACTTGCTGTCCGTAGAGTAGCTGTGGTAAAGGGTACGACAGTATCAGTTTATTCCACCCTGTCCAACCAGTGAAAAAAACAGTTAAGACCAGAGTGCCATTTTCAAGAAGAGTTCCTGACCATCCTTATCACAATGTTTGCCCGTACATTTAAAGGGATTCTTCCATTCAAGACTAATCAACACACCAGTAGATtccaacacaaacactccaaggGATCATGCAGTTTATTGCGATGAGTAAAAATCAACATGAGTTGCATAAAAAATATGCAGACCCAAACAGAGTGCAGTGAAAACACATCTTTCAATTTCAATTTTCAGAAAAAACCCTCTAGACATGAATCCATTTGAATGACAAATGCCAAGCTAAAATGATTTCTCCCAAAAAGTTGGAAAATAAACAGATCGAAAGTTACTGAAAGCAATAATGCTCAGACAAAAACTAGCAGATAAATAAAAAATGGCTTAGACAACATATATATCTCCTCACACATGCATACCAAACAGTTTGACACACAGTGGAGATTTGATCAAGGATAAATACATCACAAAGGATATCATTTTTTTCTCTGACAAGAACCCAAATGAACATAATGATGTCAACTCATTGCCTTGAATTACTTGATTCACCCTTCATTTCTAACCATCTGCACATTATGTTTAGGTGACGTGGATGAGAAACATTTCATCCTTCTATAAAGGGTTGAAAAACTGCATTTCCATTTCCTTTTGACCCCATCTGCACCACCATCCTCTGTTATTATGAGAGCAACACTGGGAAAAGTCCAATGTGTTGTGCCCAGTGCTACTGACACGTATCACTGAAGATATCAGTATTATccttattaaagatacacagaaTGAGGAGGAAGAGTCAGGCCTGTGTAGTGTAGGCTCTATCAACACCAGTGCAGTCGGCATCAGATCCCAGTTGAATAAAGGGCAACATAACACAAATGATCTTGCAGTCAATTACTTAATTAATGAGGATTGCTTAAATGAAGGATCACAATATACAGTCTCTATATGCAAAAGCCATCTACTGGTATGTATACATGTGATACTGTATTACATAAACGTatagataattgtgtgtgtccCGTAAAAGCATGAAGAGTAGCCTATCTTAAAAGAGAATCTAACACAATTCAAGGGAAACTTAGCAAAGACTCTTAAACTAAACGTTCCCCCTTATCACCAGACGTCTACACTAAATTATCCTCAATTTCCAACACTTTACTGAAAATAAGAAAAAGCATATtctaaaaataatatttatatttattgGTGAACTTTTGTAATTAAGTAAATATGAGATTTAAAGCAAATAAAAGGTTCAATCATGTCACTTATCATTATTAATCATATTTGTCTTAACTATATTTTCcatatttttgtttttgtatttttatgtttttattaccATTTTGTTTATTTCTTAAATTGTTGTAAAACATATTGAAATTTACATCCTGACTGTCTGCCTACTGTACAAAGGGAAAATAGTTTCAAAATATATTTACAGGGAAAATAGAGAACATACTAATGCTGACGTTGATTGATAATAACTCTCATTTCTTCCACTTCTTTTCCGTTGCTTCTTCAAACCTTCTGATACTGGACAACCATCCAGAATATGTGTATATAAAAAGTCCATTTGTGAAGTAATTCACAGGGGGGTGTTGACTCGGTTTGATTTAAGGCTAACTTGATGGGTTTCATCTTAATAGTATGGAGAGAGAAGTCGGTACTGACTAAATGAATAGGTTATCAACAGGTCTAGGAAAACAGCTGTTGTCACTCAATCATTTCCCCTCCATCTTCCACCTCCATATTACAGAGGTGCAGTCTGATCGTATTGGAAGTAGGAATGACTCAGCGCAATCTACTCCCTCAGCACCTTCAATCTCCATTCAGCACTGAAACACAATTTCCTGCAGCCCTTGAACTAATGACACCTCATACTAATTGAAGACAAAACCTTTCAATAACTGAAAGGCTCATGTGCTGTACAATATCTTGTGTCATCAGTCAGTTTCATATGATAAGGCATGTATTTCAGAaagtctgtgggggggggggtaccgtgcAATATACAGGAGGAATGTCCCATTTGGAGACATCCTCACGACTCACATTCAGTCGTTCATCAATACCATTACCATCTTCTGTGGGCAACAACATCTTTTAAGAGGATTTGAGTTCAATTTAGAATTACAGAGCATACGCCTATAATACACATTAAACACTCTGACTGCCGTGAAGTAAAACTGCATTCACAAATGCTTCTTCAACGTGTCTCATAAGCCTGTATGGACCTTCCTCACTTCAGAGAGTGAACGCAACGGGTTTTACGAGATAAGTGGTGTGTTAAAAAGTGAGCCTAGGAGGCGGCTGGCTGTTTTCTAGGAACCTGGATCCAGAAGGGTTGATCAAATGCTTGTTAGATGAGGCACAGCAGTCTGACAGTATGTGTGGTGTTCTTTAGTATGGACGTGTGACAGGTTTATGAAGCACTTCCGATGGTATTGTAATGTCTGTGTAATAACGTCCACATCAAGTTAAGTGTTAGTTATTCAAACATGTTGTTGTCTTGAAACACACCACAGTCTCTCATCTGTAAATATCGACTTGGTTTCAGAGCAGCACGTTTTTTCCTTCGAGACAAGTGGATATCGTACACATCTTAACACCTTGTTCCCTACGTATCGTGCTGTTACATCACGCCCTGCTGAGCTCTCTGGGGTGCACATCATCTGGAGTCCTTTCAGGCTCGTCCTTCAGTCAGTATCTTCAGCCATCTGCTTCAGGACAAGACACGTCTTTCACAGTTGTTGACCAACAAAAGTTCAGAAGCAGGGTGTGAAACCTCTTGAAACCTCAAACAAAGAAGAACCGTTCAGTACTGTGCAAATGATGCCTTCCAGATCTTTCCGCAACCAGCAAATGAATGAATGAGCATGGACTGTATATcattaaaacaaaaacaagagaCCTAATGACTTTTCACTCAGTCCTTCAGGCTTGTTAGTTGAATTAGAtaacaagcttcctgccaccatCGGGCAGACAAAGAATTTAACAAATATTAAACAGTATTGAAATATCAAAGGAACATAAAACAAACTCAAAGTCATAAGCACTTCATAATATCACTTTTGTTAATCACATTGTTAATAACATTATTGTTGTTTTACCCTGTTATTTCAGTAAGAATATCTTATTTTCATTTATGATTGAATGATCATAGCAAACAAGAGTCAAAGACAGTTGTTTGGGTGTAAGGGAGCAGAACAACtcacttagaaaaaaaggtgctatctagaaccttaaaggatTCTCCGGTTGTCCTCATAAAATAACTCTTTGAAGAATCGCTTTTGGTTACAGGTACAAAACCCTTTAGGATCCAGGTAGAACCTGTTCTAcaagagggttctacatggaaccataaaggattctacctggaaacaaaaagggttctcctatggggacagccacataacccttttggaacccttttctcTAAGCGTGTAGATGCAAAAAGAGGGAGAGTTAGTGCAGGGGGTAAACACGGCCATCGTCTTCCAAAAAACTCATTTTCGGACGCTATCATCAACATGAGTCATGACAACATCTCCTTTCTCTAATAACACTTGACCAGATGGACACTTCCCTACTCACTCACATTCCCTTTTCATAATCACTCTGGAGGTGTGACTCTGAGCCATTTGGCTCAAACTTGCAATATCACATTGAGGTGTCACTTTTGTGTTCTTTTTGAGTGTATTGATGGCAAGGGCCAAATAAATAATAGAGTTAACATAACCCTACCCACGTGTCACCTCTTGTATTCATTGTTTTGTAACAAAATAACAGGGCATGAATGTCCCCATCTTCCCTTCTAACTCACCCTGCTCTCTTCTGTCAAATATTTTCACCATTCTGTCGTTAATCTTCTCTTCCCTGACTGTTCTCCTTCCTTGTTAAAAGTGTTGCGGTTGCAATGTGGACAGTAGTGCCTCATCATCCCTGACTTCCCGGGactaatgccatccctctctccctccatgcctccccACCTAGTCTCCTCTCTCACACGTCTGACTCTATGCTGGAGAGTTTCTCGTACACGTGCCCGTTGCTGCCATTGAACGGGCGCTGTATTGGCCCCACACCCAGCGTGGAGCCGTGGAGGTTCCCTCCCAGACACAGGTCCATAGGGAACCTGGGGGCCACGGTGGACATGACCCCAGAAGTGGCAGTCGCTGGCAAGAAAGATGTCACACCCACGGAGCCCCGGAAGTCACTTCGGCTGTTTTTTGGGGgcatctgctgctgctgctgctgttgctgttgttgctttTTCATGTAGTATTGTTTGGCACCATGCAAGAGACACTGGTCGTCACCAAAGGTTGGAATAAAGGGGTTTTGGTTGACCCTATCCGGGTAGAGAGATTTGGATAAGGAGTAGGTTCCTCCTCCACCGCCCTCCATCAtggctctttctctgtccctcatgTCCCTCTCCCCCACTGAGCGGCGGTGAAGGCCCTCGCCACCTCGGAACAAGCCGAACGGCGACCCTGCTTCTTTGGCCATCTCACCACCGTAGAACAGAgggtctctgtctcgctccttctccctctctgagcCTCCATGCCTCTCAAATATGTGGGCGAAGGGGCTAACACCCTCCATATAGCGCTCCTTCTCTTTTAAGCTAACACTTCTGGGAGGTCTACGAAGGTGTCGCACGAGTGTTGCCGTCGGAGGGGCTTTCCAAAGCCGGCAGACTTCCTACGCTGGGCTTGAGATTGAGGCTGGGCGCCTCCACTTAACCCCACAGCCCCCATTCCTCCGCCTTTCCCACCCCCCATCTGTTCCAagaggtggttgttgtcctcacTGATGTCGTACAGGTTGCCTGTCTTTTTGCAGCCCTCGCAGCGCATGCAGGTGGCAGA

Function

symbol description
grin2b Enables NMDA glutamate receptor activity; glutamate-gated calcium ion channel activity; and glycine binding activity. Involved in calcium ion transmembrane import into cytosol and response to ethanol. Located in plasma membrane. Is integral component of plasma membrane. Part of NMDA selective glutamate receptor complex. Implicated in several diseases, including alcohol use disorder; autosomal dominant non-syndromic intellectual disability 6; bipolar disorder; developmental and epileptic encephalopathy 27; and neurodegenerative disease (multiple). Biomarker of Alzheimer's disease; temporal lobe epilepsy; and vascular dementia.

NR:

description
glutamate receptor ionotropic, NMDA 2B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1342357 True 6151 lncRNA 0.40 2 43213117 43219367

Neighbor

gene id symbol gene type direction distance location
LOC118938293 LOC106562616 coding downstream 147230 43053669 ~ 43065887 (-)
fmc1 LOC106607127 coding downstream 163368 43039494 ~ 43049749 (-)
LOC110486454 LOC106607126 coding downstream 173908 43032510 ~ 43039209 (-)
LOC110486451 LOC106607121 coding downstream 187408 43019077 ~ 43025709 (-)
LOC118938563 NA coding downstream 201463 43011500 ~ 43011654 (-)
LOC110486458 LOC106601205 coding upstream 46412 43265779 ~ 43272054 (-)
LOC110486460 LOC106607104 coding upstream 66389 43285756 ~ 43297849 (-)
LOC110486463 LOC106607099 coding upstream 127411 43346778 ~ 43353148 (-)
LOC110487544 NA coding upstream 136362 43355729 ~ 43362239 (-)
LOC118938297 LOC106596055 coding upstream 266315 43485682 ~ 43487100 (-)
G1177076 NA non-coding downstream 119228 43093682 ~ 43093889 (-)
G1177071 NA non-coding downstream 125029 43087788 ~ 43088088 (-)
G1177068 NA non-coding downstream 127732 43085152 ~ 43085385 (-)
G1177064 NA non-coding downstream 132580 43080179 ~ 43080537 (-)
G1177063 LOC106601209 non-coding downstream 133536 43077882 ~ 43079581 (-)
G1177151 NA non-coding upstream 36041 43255408 ~ 43255713 (-)
G1177161 NA non-coding upstream 54341 43273708 ~ 43273946 (-)
G1177162 NA non-coding upstream 54637 43274004 ~ 43274241 (-)
G1177170 NA non-coding upstream 61072 43280439 ~ 43280640 (-)
G1177175 NA non-coding upstream 134933 43352501 ~ 43362354 (-)
G1177047 NA other downstream 136764 43059430 ~ 43076353 (-)
G1176972 LOC106607127 other downstream 163573 43039174 ~ 43049544 (-)
G1177027 NA other downstream 205359 43007379 ~ 43007758 (-)
G1177025 NA other downstream 205793 43004756 ~ 43007324 (-)
LOC110486438 LOC106601158 other downstream 404037 42801570 ~ 42809120 (-)
G1177238 LOC106607096 other upstream 194792 43414159 ~ 43415103 (-)
G1177552 NA other upstream 381996 43601363 ~ 43647736 (-)
G1177709 LOC106601291 other upstream 754172 43973539 ~ 43974057 (-)
zgc:158403 LOC106601368 other upstream 757780 43977147 ~ 43992248 (-)

Expression


Co-expression Network