G1177564 (LOC106601165)


Basic Information

Item Value
gene id G1177564
gene name LOC106601165
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 43673334 ~ 43733093 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1342892
TTCCTTGTACTGGTCGGAATGGCGGCGCTCGTCCTCCACCTGCATGCACACCTCCTTCAGCTTCTTCTCTGTCCGTCTCACAAGCTTATTGGCCGCTGCTCGCTCCTTAGCCTCCTGCTCCAGCTGCTCCTCCAGCTGCAGTATCTTGGCCTCCAGGGCGGTGATGGAGGCCTTGAACTGGCTCTTCACGGAACCCTCCAGCTCG
>TU1342890
TTCCTTGTACTGGTCGGAATGGCGGCGCTCGTCCTCCACCTGCATGCACACCTCCTTCAGCTTCTTCTCTGTCCGTCTCACAAGCTTATTGGCCGCTGCTCGCTCCTTAGCCTCCTGCTCCAGCTGCTCCTCCAGCTGCAGTATCTTGGCCTCCAGGGCGGTGATGGAGGCCTTGAACTGGCTCTTCACGGAACCCTCCAGCTCGCCCAGCTTGGCCCTCA
>TU1342891
TTCCTTGTACTGGTCGGAATGGCGGCGCTCGTCCTCCACCTGCATGCACACCTCCTTCAGCTTCTTCTCTGTCCGTCTCACAAGCTTATTGGCCGCTGCTCGCTCCTTAGCCTCCTGCTCCAGCTGCTCCTCCAGCTGCAGTATCTTGGCCTCCAGGGCGGTGATGGAGGCCTTGAACTGGCTCTTCACGGAACCCTCCAGCTCG

Function

NR:

description
myosin heavy chain, embryonic smooth muscle isoform-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1342892 False 205 lncRNA 0.60 2 43673334 43733093
TU1342890 False 221 lncRNA 0.61 2 43686808 43733093
TU1342891 True 205 lncRNA 0.60 2 43700266 43733093

Neighbor

gene id symbol gene type direction distance location
LOC118938306 LOC106591500 coding downstream 2658 43667222 ~ 43670676 (-)
LOC118938552 LOC106591500 coding downstream 17721 43653409 ~ 43655613 (-)
LOC118938078 LOC106595933 coding downstream 31258 43581875 ~ 43642076 (-)
LOC118938077 LOC106595933 coding downstream 48799 43623012 ~ 43624535 (-)
LOC118938301 LOC106591500 coding downstream 62421 43608249 ~ 43610913 (-)
LOC110486471 LOC106595933 coding upstream 14435 43747528 ~ 43750702 (-)
LOC118938309 LOC106601194 coding upstream 19037 43752130 ~ 43753303 (-)
LOC110486474 LOC106601192 coding upstream 31874 43764967 ~ 43948465 (-)
zgc:158403 LOC106601368 coding upstream 245691 43977147 ~ 43992248 (-)
tspan35 LOC106601289 coding upstream 265359 43998452 ~ 44010679 (-)
G1177552 NA non-coding downstream 25598 43601363 ~ 43647736 (-)
G1177553 NA non-coding downstream 48800 43609385 ~ 43624534 (-)
LOC118938075 LOC106595933 non-coding downstream 51177 43553375 ~ 43622157 (-)
G1177513 NA non-coding downstream 110473 43480014 ~ 43562861 (-)
G1177589 NA non-coding upstream 21030 43754123 ~ 43754439 (-)
G1177608 NA non-coding upstream 90121 43823214 ~ 43871474 (-)
G1177614 NA non-coding upstream 100357 43833450 ~ 43865258 (-)
G1177633 NA non-coding upstream 102465 43835558 ~ 43836787 (-)
G1177634 NA non-coding upstream 125509 43858602 ~ 43864202 (-)
G1177238 LOC106607096 other downstream 258231 43414159 ~ 43415103 (-)
G1177175 NA other downstream 310980 43352501 ~ 43362354 (-)
G1177047 NA other downstream 596981 43059430 ~ 43076353 (-)
G1176972 LOC106607127 other downstream 623790 43039174 ~ 43049544 (-)
G1177709 LOC106601291 other upstream 240446 43973539 ~ 43974057 (-)
epor LOC106601362 other upstream 294219 44024053 ~ 44029014 (-)
G1178281 NA other upstream 729861 44462954 ~ 44463226 (-)
LOC110485184 LOC106601341 other upstream 750529 44467268 ~ 44545484 (-)

Expression


Co-expression Network