G1177566


Basic Information

Item Value
gene id G1177566
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 43701569 ~ 43734921 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1342894
AACCGAATAGCCAGAATTTGGGCTGTCTTTCTAAAAAAAAAGGGCCTTTGCTCCAAGTCTGACAAACCTAATTCCACACATTATCGTACACCACTTAAAGTAGATTgatatgtcaaatataaaatggtGGGTTATTGGACAAGGTTATATTGGTAAAGTTAACAGGGTCTTTTGCTGGTCATATATATAGGGGGAATGCTGAGGCAACATGGCGTGGTACAATCTAATTCACTACAAACCTGCTACCAAAGAGTTAGTCACATAGTTATTTTTATACTAAACTAAGTGGATTGTAGTATCTCTATGACAGTGGTGGTTTTGATGAAAACAATTCGGTGTGATCGTCATTTAGGCTACCATTTAAAAATAATTCCCTCGCTTATGCTGTGCTTTGTTTTACATATCCTGGACAGGGGTAAGGTTTGGGCTGTAGGGAGCGCGTCTACTCTGGTTGGGGAGCTGCTGGCGTCTCGTTGGCATTGGCGTCCGTGGTTTTGTTTTCCACCTCATCGTCGGATAGGAGGTCGAGCGATGTTCCCTCCACCTGCAGCTGACGCCTGCCCGAGCGGCTGGAGGAGAAACTGAT
>TU1342895
AACCGAATAGCCAGAATTTGGGCTGTCTTTCTAAAAAAAAAGGGCCTTTGCTCCAAGTCTGACAAACCTAATTCCACACATTATCGTACACCACTTAAAGTAGATTgatatgtcaaatataaaatggtGGGTTATTGGACAAGGTTATATTGGTAAAGTTAACAGGGTCTTTTGCTGGTCATATATATAGGGGGAATGCTGAGGCAACATGGCGTGGTACAATCTAATTCACTACAAACCTGCTACCAAAGAGTTAGTCACATAGTTATTTTTATACTAAACTAAGTGGATTGTAGTATCTCTATGACAGTGGTGGTTTTGATGAAAACAATTCGGTGTGATCGTCATTTAGGCTACCATTTAAAAATAATTCCCTAGCTTATGCTGTGCTTTGTTTTACATATCCTGGTCCAATACTGTACAATCATGAAAGACACATGTTTTTACCTCGTCCACCTGTGTGCCAGTAAACCAGCTGAAATGACAGTGGTTAATTCTAGCTAGAGGGCTGTTTGATTCTAATGGCTGTTCCAGGGAAGTAGCTTAACATAATTATGGTAATCTCCTGCTATTTGTTTTCGAGTGCCTATGCACACTCAGACGCCTATGCAATAAAAATGCACTATTATCTGCAATTGATGTTAAAAACGAATCCAAGGCTTGATGTGCGGTATATTCATATGGAGGAGGTGATGGATTTGCTTGGCCCTGCAGCTTGCCATAGAGGGGTAAGGCAGAGTAGTGGGGTCCACTGCTGGTGTCTGGGGTTAGGAGGACAGGGGTAAGGTTTGGGCTGTAGGGAGCGCGTCTACTCTGGTTGGGGAGCTGCTGGCGTCTCGTTGGCATTGGCGTCCGTGGTTTTGTTTTCCACCTCATCGTCGGATAGGAGGTCGAGCGATGTTCCCTCCACCTGCAGCTGACGCCTGCCCGAGCGGCTGGAGGAGAAACTGAT
>TU1342896
TGCACTATTATTTGCAATTGATGTTAAAAACGAATCCAAGGCATGATGTGCGGTATATTCATATGGAGGAGGTGATGGATTTGCTTGGCCCTGCAGCTTGCCATAGAGGGGTAAGGCAGAGTAGTGGGGTCCACTGCTGGTGTCTGGGGTTAGGAGGACAGGGGTAAGGTTTGGGCTGTAGGGAGCGCGTCTACTCTGGTTGGGGAGCTGCTGGCGTCTCGTTGGCATTGGCGTCCGTGGTTTTGTTTTCCACCTCATCGTCGGATAGGAGGTCGAGCGATGTTCCCTCCACCTGCAGCTGACGCCTGCCCGAGCGGCTGGAGGAGAAACTGAT

Function

NR:

description
myosin-10-like isoform X2

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1342894 False 586 lncRNA 0.44 4 43701569 43734921
TU1342895 False 952 lncRNA 0.44 3 43701569 43734921
TU1342896 True 334 lncRNA 0.54 2 43701569 43734254

Neighbor

gene id symbol gene type direction distance location
LOC118938308 LOC106591500 coding downstream 3961 43695000 ~ 43697608 (-)
LOC118938553 LOC106591500 coding downstream 18569 43680432 ~ 43683000 (-)
LOC118938306 LOC106591500 coding downstream 30893 43667222 ~ 43670676 (-)
LOC118938552 LOC106591500 coding downstream 45956 43653409 ~ 43655613 (-)
LOC118938078 LOC106595933 coding downstream 59493 43581875 ~ 43642076 (-)
LOC110486471 LOC106595933 coding upstream 12607 43747528 ~ 43750702 (-)
LOC118938309 LOC106601194 coding upstream 17209 43752130 ~ 43753303 (-)
LOC110486474 LOC106601192 coding upstream 30046 43764967 ~ 43948465 (-)
zgc:158403 LOC106601368 coding upstream 243863 43977147 ~ 43992248 (-)
tspan35 LOC106601289 coding upstream 263531 43998452 ~ 44010679 (-)
G1177561 NA non-coding downstream 11776 43660777 ~ 43689793 (-)
G1177552 NA non-coding downstream 53833 43601363 ~ 43647736 (-)
G1177553 NA non-coding downstream 77035 43609385 ~ 43624534 (-)
LOC118938075 LOC106595933 non-coding downstream 79412 43553375 ~ 43622157 (-)
G1177589 NA non-coding upstream 19202 43754123 ~ 43754439 (-)
G1177608 NA non-coding upstream 88293 43823214 ~ 43871474 (-)
G1177614 NA non-coding upstream 98529 43833450 ~ 43865258 (-)
G1177633 NA non-coding upstream 100637 43835558 ~ 43836787 (-)
G1177634 NA non-coding upstream 123681 43858602 ~ 43864202 (-)
G1177238 LOC106607096 other downstream 286466 43414159 ~ 43415103 (-)
G1177175 NA other downstream 339215 43352501 ~ 43362354 (-)
G1177047 NA other downstream 625216 43059430 ~ 43076353 (-)
G1176972 LOC106607127 other downstream 652025 43039174 ~ 43049544 (-)
G1177709 LOC106601291 other upstream 238618 43973539 ~ 43974057 (-)
epor LOC106601362 other upstream 292391 44024053 ~ 44029014 (-)
G1178281 NA other upstream 728033 44462954 ~ 44463226 (-)
LOC110485184 LOC106601341 other upstream 748701 44467268 ~ 44545484 (-)

Expression


Co-expression Network