G1177641


Basic Information

Item Value
gene id G1177641
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 43875226 ~ 43878468 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1343015
tctcactctccctctttcctcctgtctatctcactctccctcttttcctcctgtctatctctcactccccctttcctcctgtctatctcactctccccctttcctcctgtctatctctcactccccctttcctcctgtctatctcccccccctttcctcctgtctatctcactctccccctttcctcctgtctatctctctccctctttcctcctgtcgatctctctctccctctttcctcctgtctatctcactctcccccttttcctcctgtctatctcactctcccccttGCTTCCTGTTTATCtcactctccccctttcctcctgtctatctctctccctctttcctcctgtcgatctctctctccctctttcctcctgtctatctcactctcccccttttcctcctgtctatctcactctcccccttGCTTCCTGTTTATCtcactctccccctttcctcctgtctatctcactctccctctttcctcctgtctttctcactctccccATTTTCTCctatctcactctcccccttgcttcctgtctgtctcactctcccccttttctcctgtctatctctctccctctttccttctgtctgtctcactctccctctttcctcctgtctcctgtctatctcactctccccattttctcctgtctatctcactctccctctttccttctgtctatctcactctccctctttcctcctgtctatctcactctccctctttcctcctgtctatctcactctccccctttcctcctatctatctctctctctctttcctcctgtctatctcactctccccatttcctcctgtctatctctctccctctttcctcctgtctatctctctccctctttcctcctgtctatctcactctccccctttccgcctagtctctcagtccctcaaGCATTGGTGTCTCCTTCCCGTATCACCATTCCCCCTCAGTAACTTCTGTTTCCAGTGAGGGATAGGGATGTTTTACTCTTTACAGTTAATTAGTGTTTCCACgcgatcagcccccccc
>TU1343016
ttttcctcctgtctatctctcactccccctttcctcctgtctatctcactctccccctttcctcctgtctatctctctccctctttcctcctgtcgatctctctctccctctttcctcctgtctatctcactctcccccttttcctcctgtctatctcactctcccccttGCTTCCTGTTTATCtcactctccccctttcctcctgtctatctcactctccctctttcctcctgtctttctcactctccccATTTTCTCctatctcactctcccccttgcttcctgtctgtctcactctcccccttttctcctgtctatctctctccctctttccttctgtctgtctcactctccctctttcctcctgtctcctgtctatctcactctccccattttctcctgtctatctcactctccctctttccttctgtctatctcactctccctctttcctcctgtctatctcactctccctctttcctcctgtctatctcactctccccctttcctcctatctatctctctctctctttcctcctgtctatctcactctccccatttcctcctgtctatctctctccctctttcctcctgtctatctctctccctctttcctcctgtctatctcactctccccctttccgcctagtctctcagtccctcaaGCATTGGTGTCTCCTTCCCGTATCACCATTCCCCCTCAGTAACTTCTGTTTCCAGTGAGGGATAGGGATGTTTTACTCTTTACAGTTAATTAGTGTTTCCACgcgatcagcccccccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1343015 False 1046 lncRNA 0.51 6 43875226 43878468
TU1343016 True 784 lncRNA 0.50 4 43875226 43876249

Neighbor

gene id symbol gene type direction distance location
LOC118938309 LOC106601194 coding downstream 121923 43752130 ~ 43753303 (-)
LOC110486471 LOC106595933 coding downstream 124524 43747528 ~ 43750702 (-)
LOC118938081 LOC106591500 coding downstream 146970 43727232 ~ 43728256 (-)
LOC118938308 LOC106591500 coding downstream 177618 43695000 ~ 43697608 (-)
LOC118938553 LOC106591500 coding downstream 192226 43680432 ~ 43683000 (-)
zgc:158403 LOC106601368 coding upstream 100316 43977147 ~ 43992248 (-)
tspan35 LOC106601289 coding upstream 119984 43998452 ~ 44010679 (-)
LOC110486478 LOC106601191 coding upstream 138122 44016590 ~ 44021722 (-)
epor LOC106601362 coding upstream 145585 44024053 ~ 44029014 (-)
rab3db LOC106601190 coding upstream 151487 44029955 ~ 44043512 (-)
G1177608 NA non-coding downstream 3752 43823214 ~ 43871474 (-)
G1177610 NA non-coding downstream 5887 43868189 ~ 43869339 (-)
G1177614 NA non-coding downstream 9968 43833450 ~ 43865258 (-)
G1177634 NA non-coding downstream 11024 43858602 ~ 43864202 (-)
G1177633 NA non-coding downstream 38439 43835558 ~ 43836787 (-)
G1177707 NA non-coding upstream 94680 43973148 ~ 43973355 (-)
G1177719 NA non-coding upstream 117286 43995754 ~ 43995962 (-)
G1177897 NA non-coding upstream 136104 44014572 ~ 44014850 (-)
G1177907 LOC100136012 non-coding upstream 185683 44064151 ~ 44064964 (-)
LOC110486490 NA non-coding upstream 237572 44116040 ~ 44118663 (-)
G1177552 NA other downstream 259218 43601363 ~ 43647736 (-)
G1177238 LOC106607096 other downstream 460123 43414159 ~ 43415103 (-)
G1177175 NA other downstream 512872 43352501 ~ 43362354 (-)
G1177047 NA other downstream 798873 43059430 ~ 43076353 (-)
G1176972 LOC106607127 other downstream 825682 43039174 ~ 43049544 (-)
G1177709 LOC106601291 other upstream 95071 43973539 ~ 43974057 (-)
G1178281 NA other upstream 584486 44462954 ~ 44463226 (-)
LOC110485184 LOC106601341 other upstream 605154 44467268 ~ 44545484 (-)

Expression


Co-expression Network