G1177426


Basic Information

Item Value
gene id G1177426
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 43976714 ~ 43979752 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1342717
aatttggctggatgtcttttgggtggtggaccattcttgatacacacaggaaactgttcaaatgtgaaaaatccagcagcgttgcagttcttgacacaaaccagtgcacctggcacccagtaccataccctgttcaaaggcacttgaattgtccattcaccctcaatgGTACACATACAAAATCTGTCTCAATTGTCAAGGTGTAAAAAtcctttaacccgtctcctcccattcatcaagagcaggtgttcataatgttttgtacactcggcgTAGGTACTAGTCATAAATCTTTCTGTAAAGTCACAATGTCACCTCTTAATCAGTTTGTTATTTATAAGCCAATATGGACAAGGACGGGTTACACTCGACAGATATGCTCCAGTAAAATATAATAAAAGGGCTTGTAGCAAATGGACATATTTAATCATGTTTTTCAAATCTTTTAACCACGCCTTTCTTTGTACAAGGTCTTGAGTGACAGTCTAAACTTTATTTGAAGTAATGAATATCAGAGGTTAGTGAGGTTAAACTTATTTCAACTGACTACTTTCCTCTGTACATTGCAGCAGggacaacatacagttgaagtcagaagtatacataaactagttttaatgactccaacctaagtgtttcaatcactccacacatttcttgtaacaaactatcgttttggcaagttggttaggacatctactttgtgcataagtaatttttccaacaattgtttaaagacaatattatttcaattataattcactgtatcacaattccagtttgtcagaagtgtacatacaaagttgactgtgcctttaaacagcttggaaaattccagaaaatgtcatggctttagaagcttctgacaggctaattgacatcatttgagtcaattggaggtgtacctgtggatctatttcaaggactaccttcaaactcagtgcctctttgcttgacatcataggaaaatcaaaaatcagaaattgtagacctctacaagtctgcttcatccttgggagcaatttccaaacacctgaaggtaccatattcatctgtacaaacagtacgcaagtataaacaccatgggaccacacagccatcataccgctcaggaaggagactcgatctcctagagattaacgtactttgatgcgaaaagtgcaaatcaatcccagagcaacagcaaaggaccttatgaagatgctggaggaaacaggtacatagccacagtaaaacgagtcctatatctcgacatgacctgaaaggccgctcagcaaggaagaagccactgctctaaaaccgccataaaaaagccagactacggtttgcaaatgcacaaggggacaaagattgtactttttggagaaatgtcctctggtctgatgaaacaaaaatacaactgtttggccataatgacagttgttatgtttggaggaaaaagggggaggcttgcaagcagaaaaacaccatcccaactgtgaagcacggggctggcagcatcgtgttatgggggtgctttgctgggaaggatgcacttcacaaaatggatggcatcatgaggaagaaaaattatgtggatatattgatgcaacagcaagacatcagtcaggaagttaagcttggtcgcaaatgggtcttccaaatggacaatgaccccaatcatacttccaatgttgtggcaaaatggcttaaggacaacaaagtcaaggtattggagtggccatcacaaagccctgacctcaatcctatagaaaatttgtgggcagaactgaaaaagcatgtgcgagcaaggaggccaacaaacctgactcagttacaccaactctgtcaggaggaatgggccaaaattcacccaacttattgtgggaagcttgtggaaggctgtccaaaacatttgacccaagttaaaaaaaattgaaaggcaatgctaccaaatactaattgagtgtatgtaaacttctgaccctctgggaatgtgatgaaagaaataaaagctgaaatcattctctactattattctgacatttcacattcgtaaaatgaagtggtgatcctaactgacctagaacagggaatttttactaggattaaatgtcaggaattgtgaaaaacagtttaaatatatttgactaaggtgtatgtaaacttctgacttcaaatgtagCATGACCTATTGATTAAGGTTCTTCTACATCTACTAATACATAAATGTTAATACATTTGTTAAAATAACTTGGATCAAAGCAATGTCAtacgttatgttatgttatgtctgTCTTACTCAGTTATCACTAAATGGGTGCTTTTATCAAAATGCTTACAGTAATACTCAATCACTTTTGGAGAAGTTAAAAGCAAAACTCTACCTCACAACTTACATTGTTAATAAGTTCATTTCAAcatgtttttccccacaaaaaaaTGTGGATATACCATATTCAAATTGTTTTGAGCAACTGCCTCCCAATCTACTGTTCTGGGTAACCAGTACAGTGATATAAGTACCACACATTCAAACACTGAAGATAGAAGCTGAACctaactacagatgtaggatcaggGTGTTCACGCAGTAGGTGGATAAAATGCCTCTGATCTTGAACCAGCAGGTAGAGGCAACTTCTACCAACTCCCATTCAAAACTCAAGTGTTTAAATCAGGGAAAGATCACCATCCGTGAAGGACGGAGACTTTCACCACAAAGCAAGTAACATTTGGAGGCAGTGATCAAAGTGGCTGAGGATGTATGAGAGAGCAAGTCTTCCCGGAACGTCTACACATGGCAGGGGAAGCAAGTCCAGTGCTTGCTCAGCACAATGACACCTGTTATACTACAGTGGTGTGATTTCATCTTGGTCACTAGTGTCAGCCTTGAGTTTGGAGAGAGCAGCATGGATCCTGAACTGGGTGCGTGACTCCATGGAGTACTCCTTGTAGTTAGTTCTGAGGGAACAGAACAAAGTGGATAGGAATCATGAGTAAGACTTAGTAACATTGTATGTGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1342717 True 3004 lncRNA 0.40 2 43976714 43979752

Neighbor

gene id symbol gene type direction distance location
LOC110486476 LOC106601291 coding upstream 1992 43973455 ~ 43974722 (+)
LOC110486472 LOC106601193 coding upstream 212119 43755202 ~ 43764595 (+)
LOC118936423 LOC106601199 coding upstream 241112 43732909 ~ 43735602 (+)
LOC118938307 LOC106601199 coding upstream 273967 43686400 ~ 43702747 (+)
LOC118938080 LOC106601199 coding upstream 300395 43673287 ~ 43676319 (+)
swsap1 LOC106601363 coding downstream 42025 44021777 ~ 44025791 (+)
LOC110486483 LOC106607087 coding downstream 68091 44047843 ~ 44050201 (+)
elof1 elof1 coding downstream 70836 44050588 ~ 44053092 (+)
LOC110486491 LOC106607082 coding downstream 194298 44174050 ~ 44211083 (+)
LOC110486493 LOC106601357 coding downstream 233447 44213199 ~ 44217998 (+)
G1177389 NA non-coding upstream 100464 43875239 ~ 43876250 (+)
G1177379 NA non-coding upstream 105515 43823648 ~ 43871199 (+)
G1177344 NA non-coding upstream 197919 43777454 ~ 43778795 (+)
LOC118938305 LOC106601199 non-coding upstream 314391 43659366 ~ 43662323 (+)
G1177263 NA non-coding upstream 548032 43428092 ~ 43428682 (+)
G1177718 NA non-coding downstream 16713 43996465 ~ 43997368 (+)
G1177722 NA non-coding downstream 18703 43998455 ~ 43998981 (+)
G1177724 NA non-coding downstream 21275 44001027 ~ 44001383 (+)
G1177734 LOC100194703 non-coding downstream 24828 44004580 ~ 44005184 (+)
G1177741 NA non-coding downstream 31170 44010922 ~ 44011182 (+)
LOC110486465 bglap other upstream 568772 43406158 ~ 43407943 (+)
LOC110486464 mgp other upstream 574434 43397744 ~ 43402308 (+)
LOC110485182 LOC106607095 other upstream 711558 43259175 ~ 43265600 (+)
LOC110486447 LOC106607129 other upstream 1004503 42963102 ~ 42990476 (+)
LOC110486430 LOC106601228 other upstream 1246603 42725254 ~ 42734581 (+)
G1177750 NA other downstream 139126 44118878 ~ 44121922 (+)
G1178363 NA other downstream 688316 44668068 ~ 44668459 (+)
G1178425 NA other downstream 880117 44859869 ~ 44864183 (+)
LOC110485188 LOC106601310 other downstream 940611 44878675 ~ 44943951 (+)

Expression


Co-expression Network