G1178343


Basic Information

Item Value
gene id G1178343
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 44612166 ~ 44612256 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1343838
AGTAAAATTACAAATGTATGTTTGCTCAAAACTACTCAAAAccatttcccagcatgctctatcgcaggttgattttcagaattgtttgttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1343838 True 91 lncRNA 0.33 1 44612166 44612256

Neighbor

gene id symbol gene type direction distance location
LOC110486506 LOC106607024 coding upstream 11144 44554447 ~ 44601022 (+)
LOC110486504 LOC106607023 coding upstream 66682 44513282 ~ 44545484 (+)
LOC110486502 LOC106607019 coding upstream 102041 44496966 ~ 44510125 (+)
tppc5 tppc5 coding upstream 115452 44494318 ~ 44496714 (+)
LOC110486498 LOC106607075 coding upstream 259657 44344598 ~ 44352509 (+)
engl LOC106607025 coding downstream 650 44612906 ~ 44624369 (+)
LOC110486509 LOC106607027 coding downstream 37592 44649848 ~ 44653738 (+)
LOC110486510 ddx39 coding downstream 44734 44656990 ~ 44663565 (+)
LOC110486513 LOC106601338 coding downstream 69800 44682056 ~ 44690065 (+)
LOC110486511 LOC100380669 coding downstream 87279 44699535 ~ 44731365 (+)
G1178316 NA non-coding upstream 58764 44553160 ~ 44553402 (+)
G1178172 LOC106607007 non-coding upstream 131465 44480297 ~ 44480701 (+)
G1178139 LOC106607007 non-coding upstream 132066 44479727 ~ 44480100 (+)
G1178170 NA non-coding upstream 132586 44479378 ~ 44479580 (+)
G1178169 NA non-coding upstream 135380 44476112 ~ 44476786 (+)
G1178349 NA non-coding downstream 13325 44625581 ~ 44625849 (+)
G1178358 LOC106607027 non-coding downstream 42151 44654407 ~ 44656605 (+)
G1178360 NA non-coding downstream 52696 44664952 ~ 44665451 (+)
G1178362 NA non-coding downstream 55357 44667613 ~ 44667922 (+)
LOC110486491 LOC106607082 other upstream 406596 44174050 ~ 44211083 (+)
G1177750 NA other upstream 490244 44118878 ~ 44121922 (+)
LOC110486465 bglap other upstream 1204224 43406158 ~ 43407943 (+)
LOC110486464 mgp other upstream 1209886 43397744 ~ 43402308 (+)
LOC110485182 LOC106607095 other upstream 1347010 43259175 ~ 43265600 (+)
G1178363 NA other downstream 55812 44668068 ~ 44668459 (+)
G1178425 NA other downstream 247613 44859869 ~ 44864183 (+)
LOC110485188 LOC106601310 other downstream 308107 44878675 ~ 44943951 (+)
LOC110486526 smarca4 other downstream 355112 44967368 ~ 44996127 (+)
G1179156 NA other downstream 700074 45312330 ~ 45313033 (+)

Expression


Co-expression Network