G1178499


Basic Information

Item Value
gene id G1178499
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 44900331 ~ 44900634 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1344010
agtcagagttatacttaaactaaataTTTGATAGTGAGAGCTTTGCAATAGCAATGGCTGGTCGACGAATCACCATTTCTAATGATCCGTTGAGGGCGCcgagacaaaagtacaaaggtcttttatagccaagatacacccctttcaacctacatgacaaacaacagatatATAGAATGGGTCAAGGTTAAGATCTGCATAAAAGATAGCTATAATAcatagcagacagtatctgctgtgtcaacagttttcattgtatagaccagtgtctggccctccgactccaaactggaaccatctctcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1344010 True 304 lncRNA 0.40 1 44900331 44900634

Neighbor

gene id symbol gene type direction distance location
LOC110486520 LOC106607037 coding upstream 53323 44845151 ~ 44847008 (+)
LOC110486516 NA coding upstream 128007 44760430 ~ 44772324 (+)
LOC110486517 LOC106607033 coding upstream 140239 44753007 ~ 44760092 (+)
LOC110486515 LOC106586974 coding upstream 151698 44741769 ~ 44748633 (+)
LOC110486514 LOC106601335 coding upstream 162479 44731698 ~ 44737852 (+)
LOC110486523 LOC106607042 coding downstream 43815 44944449 ~ 44956000 (+)
LOC110486526 smarca4 coding downstream 67055 44967368 ~ 44996127 (+)
LOC100135849 LOC106607045 coding downstream 100924 45001558 ~ 45015370 (+)
LOC110486527 LOC100286593 coding downstream 118673 45019307 ~ 45025593 (+)
LOC118938604 NA coding downstream 122563 45023197 ~ 45023294 (+)
G1178491 NA non-coding upstream 8760 44891290 ~ 44891571 (+)
LOC110485188 LOC106601310 non-coding upstream 9998 44878675 ~ 44943951 (+)
G1178448 NA non-coding upstream 60161 44839948 ~ 44840170 (+)
G1178445 NA non-coding upstream 63081 44837017 ~ 44837250 (+)
G1178444 NA non-coding upstream 63419 44836630 ~ 44836912 (+)
G1178500 NA non-coding downstream 263 44900897 ~ 44901230 (+)
G1178502 NA non-coding downstream 2451 44903085 ~ 44903721 (+)
G1178508 NA non-coding downstream 12151 44912785 ~ 44912993 (+)
G1178511 NA non-coding downstream 13974 44914608 ~ 44914840 (+)
G1178457 yo84 non-coding downstream 59455 44960089 ~ 44961764 (+)
G1178425 NA other upstream 36148 44859869 ~ 44864183 (+)
G1178363 NA other upstream 231872 44668068 ~ 44668459 (+)
LOC110486491 LOC106607082 other upstream 694761 44174050 ~ 44211083 (+)
G1177750 NA other upstream 778409 44118878 ~ 44121922 (+)
LOC110486465 bglap other upstream 1492389 43406158 ~ 43407943 (+)
G1179156 NA other downstream 411696 45312330 ~ 45313033 (+)
G1179362 NA other downstream 561954 45462588 ~ 45462943 (+)
LOC110485192 LOC106601391 other downstream 628802 45529398 ~ 45554103 (+)

Expression


Co-expression Network