G1178508


Basic Information

Item Value
gene id G1178508
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 44912785 ~ 44912993 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1344022
GTCTGTGAACTTGAATAACTATGGAGTcgggtgtctctctcctctgtctcctctcctcgtctcacTGGTCACCCTCTCTCAACTCTTATCTGTGTCTCCCCTGCTGCACATTGCGTAGCAACAAGCCAACATGTGATCTGAGCCCACCGCTcagtgctctctcctctccactaactctctcctctgcctccttcCCACCTCTCCTGTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1344022 True 209 lncRNA 0.54 1 44912785 44912993

Neighbor

gene id symbol gene type direction distance location
LOC110486520 LOC106607037 coding upstream 65777 44845151 ~ 44847008 (+)
LOC110486516 NA coding upstream 140461 44760430 ~ 44772324 (+)
LOC110486517 LOC106607033 coding upstream 152693 44753007 ~ 44760092 (+)
LOC110486515 LOC106586974 coding upstream 164152 44741769 ~ 44748633 (+)
LOC110486514 LOC106601335 coding upstream 174933 44731698 ~ 44737852 (+)
LOC110486523 LOC106607042 coding downstream 31456 44944449 ~ 44956000 (+)
LOC110486526 smarca4 coding downstream 54696 44967368 ~ 44996127 (+)
LOC100135849 LOC106607045 coding downstream 88565 45001558 ~ 45015370 (+)
LOC110486527 LOC100286593 coding downstream 106314 45019307 ~ 45025593 (+)
LOC118938604 NA coding downstream 110204 45023197 ~ 45023294 (+)
G1178502 NA non-coding upstream 9064 44903085 ~ 44903721 (+)
G1178500 NA non-coding upstream 11555 44900897 ~ 44901230 (+)
G1178499 NA non-coding upstream 12151 44900331 ~ 44900634 (+)
G1178491 NA non-coding upstream 21214 44891290 ~ 44891571 (+)
LOC110485188 LOC106601310 non-coding upstream 22452 44878675 ~ 44943951 (+)
G1178511 NA non-coding downstream 1615 44914608 ~ 44914840 (+)
G1178457 yo84 non-coding downstream 47096 44960089 ~ 44961764 (+)
G1178465 NA non-coding downstream 51028 44964021 ~ 44965492 (+)
G1178536 NA non-coding downstream 104684 45017677 ~ 45017927 (+)
G1178541 NA non-coding downstream 122682 45035675 ~ 45035971 (+)
G1178425 NA other upstream 48602 44859869 ~ 44864183 (+)
G1178363 NA other upstream 244326 44668068 ~ 44668459 (+)
LOC110486491 LOC106607082 other upstream 707215 44174050 ~ 44211083 (+)
G1177750 NA other upstream 790863 44118878 ~ 44121922 (+)
LOC110486465 bglap other upstream 1504843 43406158 ~ 43407943 (+)
G1179156 NA other downstream 399337 45312330 ~ 45313033 (+)
G1179362 NA other downstream 549595 45462588 ~ 45462943 (+)
LOC110485192 LOC106601391 other downstream 616443 45529398 ~ 45554103 (+)

Expression


Co-expression Network