G1178457 (yo84)


Basic Information

Item Value
gene id G1178457
gene name yo84
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 44960089 ~ 44961764 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1343968
agttctggcctggtttagatcttatctgttggaaagatatccgTTTGTCTCTgtaaatggtttgtcctctgacaaatcaactgtaaatttcagtgttcctcaaggttccgttttaggaccactattgttttcactatatatttgacctcttggggatgtcattcgaaaacataatgttaactttcactgctatgcggatgacataCAGCTGTACATtgcaatgaaacatggtgaagccccaaaattgccctcactagaagcctgtgtttcagacataaggaagtggatggctgcaaacgttctacttttaaactcggacaaaacagagatgcttgttctaggtcctgagaaacaaagagatcttctgttgaatctgacaattaatcttaatggttgtacagtcgtctcaaataaaactgcgaaggacctcggcgttactctggaccccgatctctcttttgacgaacatatcaagactgtttcaaggacagtttttttttccatctacgtaacattgcaaaaatcagaaactttctgtccaaaaatgatgcagaaaaatgtatccatgcttttgttacttctaggttagactactgcaatgctctactttccggctacccggataaagcactaaataaacttcagttagtgctaaatatggctgctagaatcctgactagaaccaaaaaatgtcatcatattactccagtgctagcctccctacactggcttcctgtcaaggtaaaggctgatttcaaggttttactgctaacctacaaagcattgcaTGGGCTTGCTTACcatgggtcatatgattgagtgtagtctggcccagaagtgtgaaggtgaacggaaagactctggagcaacgaactgcccttgctgtctctgcctggccggttcccctctttccattgggattctctgcctctaaccctattacaggggctgagtcactggcttactggtgctctttcatgccgtccctaggaggggtgcgtcacttgagtgggttgagtcatggatgtgatcttcctgtctgggttgggccgtggcggagatctttgtgggctatacccggccttgtctcaggatggacctgagccctaggaccatgcctcaggactaccctgcatgatgactccttgctgtccccagtccacctggccgtgctgctgctccagtttcaactgttctgcctgtgattattattatttgaccatgctggtcatttatgaacattttggccatgttctgttataatctccaccaggcacaaccagaagaggactggccacccctcatagcctagttcctctctaggttttttcctaggttttggcctttctagggagtttttcctagccaccgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtatagcactttgagatatcagctgatgtacgaagggctatataaataaatttgtttacatttgaAATAAAAATTAGATTTGATAACCATTA

Function

NR:

description
ORF2 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1343968 True 1513 lncRNA 0.44 2 44960089 44961764
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110486523 LOC106607042 coding upstream 4089 44944449 ~ 44956000 (+)
LOC110485188 LOC106601310 coding upstream 16138 44878675 ~ 44943951 (+)
LOC110486520 LOC106607037 coding upstream 113081 44845151 ~ 44847008 (+)
LOC110486516 NA coding upstream 187765 44760430 ~ 44772324 (+)
LOC110486517 LOC106607033 coding upstream 199997 44753007 ~ 44760092 (+)
LOC110486526 smarca4 coding downstream 5925 44967368 ~ 44996127 (+)
LOC100135849 LOC106607045 coding downstream 39794 45001558 ~ 45015370 (+)
LOC110486527 LOC100286593 coding downstream 57543 45019307 ~ 45025593 (+)
LOC118938604 NA coding downstream 61433 45023197 ~ 45023294 (+)
LOC110486529 LOC106607046 coding downstream 64425 45026189 ~ 45028620 (+)
G1178511 NA non-coding upstream 45249 44914608 ~ 44914840 (+)
G1178508 NA non-coding upstream 47096 44912785 ~ 44912993 (+)
G1178502 NA non-coding upstream 56368 44903085 ~ 44903721 (+)
G1178500 NA non-coding upstream 58859 44900897 ~ 44901230 (+)
G1178499 NA non-coding upstream 59455 44900331 ~ 44900634 (+)
G1178465 NA non-coding downstream 2257 44964021 ~ 44965492 (+)
G1178536 NA non-coding downstream 55913 45017677 ~ 45017927 (+)
G1178541 NA non-coding downstream 73911 45035675 ~ 45035971 (+)
G1178549 NA non-coding downstream 83187 45044951 ~ 45045202 (+)
G1178554 NA non-coding downstream 89400 45051164 ~ 45051364 (+)
G1178425 NA other upstream 95906 44859869 ~ 44864183 (+)
G1178363 NA other upstream 291630 44668068 ~ 44668459 (+)
LOC110486491 LOC106607082 other upstream 754519 44174050 ~ 44211083 (+)
G1177750 NA other upstream 838167 44118878 ~ 44121922 (+)
G1179156 NA other downstream 350566 45312330 ~ 45313033 (+)
G1179362 NA other downstream 500824 45462588 ~ 45462943 (+)
LOC110485192 LOC106601391 other downstream 567672 45529398 ~ 45554103 (+)
LOC118936304 LOC106601427 other downstream 1212264 46173911 ~ 46176562 (+)

Expression

G1178457(yo84) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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G1178457(yo84) Expression in each Bioproject

Bar chart with 21 bars.
G1178457(yo84) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.

Co-expression Network