G1178465


Basic Information

Item Value
gene id G1178465
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 44964021 ~ 44965492 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1343976
CTGTGACCGTAGGAGTGAAATTACGGAAAAAGTGGACCCTTGCcctttggctgatccatttgtggtttcagagTGGGTGAAAATTGAGTTGGGTGGTGTGGAGTCGGTGAAGGTAACCCGAAGTGGTCTTGtgattgtttgtgtttctgtgttgggTCAGATGAAGCTGGCGCTTCGCGTCAAACGTCTGGGGTCAGGATatgtgaattgttttgctctcaagTATAGGGCGCCATTAAAATGAGTGAGGTAGGGGTGAAAGTGGACAATCTGAAGCTAGGGGAAGATTcccggtgtttgtgatgctctTCGTTTGGTGCGACGCAGACTGTGGCTTGAGTGGAGAAACAGAGGAGTCGTGTTTTTTTTATGTTGAGTTTTAGCCCGGCAAAGTGATGTTATATCGGTTATCCCTCCCTGTACGAGCTTTTGTACCGAATACATTACGATGTTAACGTTACAGATGTGGCAGCAGtataggagggaggttcctaggtgtgcagaagggcatgagacaaaggtaTGTGTAGCGTTGGTGAAttttggttgagagaatgccaagtgtgcaaagctgtcaaggcaaagggttgctactttgaagaatctcaaattttggggaatattcagaggtggatactttccgtgggaattaacaggaaCGGGAATATGCTaaattaataccatttaaatgtagatgttttctgcattggatatatttaccatatcatatggagacagaaacataaaccttttaccttataagtaaacataatttaaaatgttacaatccttccaatagaataataataatacaacatTTTATGAATTTAACTTTCATTAaattagttgactcttcacatgggatgaacaacaaaataaagggaatgatccccaatgatcgatcgcatctcccaaaaacgtttccAACATACATCTTTAAAatgaaactaaagctttggttgtcttcctctcatgcttccatgtcttctccctggaccgcctcaatgtccacctcttgatcatcagactctgaggcctcatcttcacggTCACTTTCCCACCTTGTTGAGGTTGGCTCAAAAAGCCTCCAATTTGCCTGGATGGCTACCAATTTGTCAACCcatgtattggtcagcctgttgcgtgctttggtgtgtgtgttcacaaacaaggaccagttgcgctctgaggcggtggctgttggtgggatttggaggataatggaggcaacagggaaacagcctcagatccacaaagtcccttccaccaggtagctgatgagatatgttggcatgaCTGCCATATGTTGGCAcgattgcatctccatcccaaagcccttgcttggaagtgtacttcaccagactgttaagaaccttgccctcatccaggtcATGGTggtgagacacggtagtgatgacaccataggccttgttgatctttGCACCAGACAGAATGCTCTTggcagcatactt

Function

NR:

description
uncharacterized protein LOC106675542

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1343976 True 1472 lncRNA 0.44 1 44964021 44965492

Neighbor

gene id symbol gene type direction distance location
LOC110486523 LOC106607042 coding upstream 8021 44944449 ~ 44956000 (+)
LOC110485188 LOC106601310 coding upstream 20070 44878675 ~ 44943951 (+)
LOC110486520 LOC106607037 coding upstream 117013 44845151 ~ 44847008 (+)
LOC110486516 NA coding upstream 191697 44760430 ~ 44772324 (+)
LOC110486517 LOC106607033 coding upstream 203929 44753007 ~ 44760092 (+)
LOC110486526 smarca4 coding downstream 2197 44967368 ~ 44996127 (+)
LOC100135849 LOC106607045 coding downstream 36066 45001558 ~ 45015370 (+)
LOC110486527 LOC100286593 coding downstream 53815 45019307 ~ 45025593 (+)
LOC118938604 NA coding downstream 57705 45023197 ~ 45023294 (+)
LOC110486529 LOC106607046 coding downstream 60697 45026189 ~ 45028620 (+)
G1178457 yo84 non-coding upstream 2257 44960089 ~ 44961764 (+)
G1178511 NA non-coding upstream 49181 44914608 ~ 44914840 (+)
G1178508 NA non-coding upstream 51028 44912785 ~ 44912993 (+)
G1178502 NA non-coding upstream 60300 44903085 ~ 44903721 (+)
G1178500 NA non-coding upstream 62791 44900897 ~ 44901230 (+)
G1178536 NA non-coding downstream 52185 45017677 ~ 45017927 (+)
G1178541 NA non-coding downstream 70183 45035675 ~ 45035971 (+)
G1178549 NA non-coding downstream 79459 45044951 ~ 45045202 (+)
G1178554 NA non-coding downstream 85672 45051164 ~ 45051364 (+)
G1178555 NA non-coding downstream 100906 45066398 ~ 45101821 (+)
G1178425 NA other upstream 99838 44859869 ~ 44864183 (+)
G1178363 NA other upstream 295562 44668068 ~ 44668459 (+)
LOC110486491 LOC106607082 other upstream 758451 44174050 ~ 44211083 (+)
G1177750 NA other upstream 842099 44118878 ~ 44121922 (+)
G1179156 NA other downstream 346838 45312330 ~ 45313033 (+)
G1179362 NA other downstream 497096 45462588 ~ 45462943 (+)
LOC110485192 LOC106601391 other downstream 563944 45529398 ~ 45554103 (+)
LOC118936304 LOC106601427 other downstream 1208536 46173911 ~ 46176562 (+)

Expression


Co-expression Network