G1178958 (LOC106607010)


Basic Information

Item Value
gene id G1178958
gene name LOC106607010
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 44969210 ~ 44981200 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1344529
GTCTGTTGTAGTTTGCTGGTGGCTGTCCAGGCCCCGCTCCAGGCCCAGAGGAAGGGGGCATGTTGGGCATCCCTGGCTGCTGCTGCATCCCTGGCATGGGCCTCTTGCCCTGCACGGCCATCTGCAGGTGGTCTGTTGTAGTTTGCTGGTGGCTGTCCAGGCCCCGCTCCAGGCCCAGAGGAAGGGGGCATGTTGGGCATCCCTGGCATGGGCCTCTTGCCCTGCACAGCCATTTGCAGGTGGTCTGGCAGGGGCTGCCTGCGGTCCAGCATCTTGTAGGCCATGATCTGGGCCCTGAGCTGGTGCAGCTGGTTTTGGTTGAAGGGGGTGGGTCCACCTGGCCCAACCCCACCTGGCACAGAACCACCACTCAGGACACCACCGAGGTTCTGCTGGGCCATGGCCTGGGGGTCACCGCCCTCCATGGGGACACCTGGACCAGAGGGCATCATGGGGCAGGGTGGAGGGCCGTTGGCTGGCACAGGGCTGGGAGAGTGCTCAGAACCCCCCAGTGGAGAGGG

Function

NR:

description
transcription activator BRG1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1344529 True 521 TUCP 0.65 2 44969210 44981200

Neighbor

gene id symbol gene type direction distance location
LOC110486524 LOC106607044 coding downstream 9550 44955574 ~ 44959660 (-)
LOC110486521 rbp coding downstream 104984 44856937 ~ 44864226 (-)
tdx tdx coding downstream 116537 44850578 ~ 44852940 (-)
hook2 LOC106607036 coding downstream 165983 44786935 ~ 44803227 (-)
LOC110486518 LOC106601332 coding downstream 194576 44772602 ~ 44774634 (-)
LOC110486528 LOC106607047 coding upstream 48564 45029764 ~ 45034405 (-)
il-8 il-8 coding upstream 104069 45085269 ~ 45087130 (-)
LOC110486532 LOC106607051 coding upstream 151829 45133029 ~ 45135645 (-)
LOC110486530 LOC106601319 coding upstream 155556 45136756 ~ 45143108 (-)
ankrd54 LOC106607054 coding upstream 162128 45143328 ~ 45145991 (-)
G1178946 LOC106607042 non-coding downstream 7327 44946191 ~ 44961883 (-)
G1178942 LOC106607040 non-coding downstream 25055 44941019 ~ 44944155 (-)
G1178924 NA non-coding downstream 50593 44918392 ~ 44918617 (-)
G1178919 NA non-coding downstream 57641 44911225 ~ 44911569 (-)
G1178913 NA non-coding downstream 63678 44905303 ~ 44905532 (-)
G1178959 smarca4 non-coding upstream 7769 44988969 ~ 44990593 (-)
G1178962 NA non-coding upstream 13626 44994826 ~ 44996003 (-)
G1178974 NA non-coding upstream 31585 45012785 ~ 45014745 (-)
G1178980 LOC106601324 non-coding upstream 39098 45020298 ~ 45021747 (-)
G1179064 NA non-coding upstream 165264 45146464 ~ 45146663 (-)
G1178765 LOC100380669 other downstream 237859 44725639 ~ 44731351 (-)
G1178763 LOC106607027 other downstream 315742 44653072 ~ 44653468 (-)
LOC110485184 LOC106601341 other downstream 423726 44467268 ~ 44545484 (-)
G1178286 LOC106607023 other downstream 438679 44513436 ~ 44530531 (-)
G1178281 NA other downstream 505984 44462954 ~ 44463226 (-)
G1178982 LOC106607046 other upstream 45315 45026515 ~ 45028613 (-)
G1178996 NA other upstream 70376 45051576 ~ 45052024 (-)
zgc:171844 LOC106607059 other upstream 202260 45182660 ~ 45193315 (-)
G1179619 LOC106601391 other upstream 548236 45529436 ~ 45530114 (-)

Expression


Co-expression Network