Gene
RNA
| Item | Value |
|---|---|
| gene id | G1178959 |
| gene name | smarca4 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048577.1 |
| NCBI id | CM023231.2 |
| chromosome length | 73332040 |
| location | 44988969 ~ 44990593 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| smarca4 | Enables several functions, including DNA polymerase binding activity; RNA polymerase II-specific DNA-binding transcription factor binding activity; and lysine-acetylated histone binding activity. Contributes to RNA polymerase I core promoter sequence-specific DNA binding activity. Involved in several processes, including chromatin organization; regulation of signal transduction; and regulation of transcription, DNA-templated. Located in chromatin and nucleolus. Part of SWI/SNF complex and npBAF complex. Implicated in Coffin-Siris syndrome 4; hepatocellular carcinoma; lung non-small cell carcinoma; and rhabdoid cancer. Biomarker of prostate cancer. |
| description |
|---|
| unnamed protein product |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1344538 | False | 776 | lncRNA | 0.57 | 2 | 44988969 | 44990205 |
| TU1344533 | True | 479 | lncRNA | 0.62 | 2 | 44990000 | 44990593 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110486524 | LOC106607044 | coding | downstream | 29309 | 44955574 ~ 44959660 (-) |
| LOC110486521 | rbp | coding | downstream | 124743 | 44856937 ~ 44864226 (-) |
| tdx | tdx | coding | downstream | 136296 | 44850578 ~ 44852940 (-) |
| hook2 | LOC106607036 | coding | downstream | 185742 | 44786935 ~ 44803227 (-) |
| LOC110486518 | LOC106601332 | coding | downstream | 214335 | 44772602 ~ 44774634 (-) |
| LOC110486528 | LOC106607047 | coding | upstream | 39171 | 45029764 ~ 45034405 (-) |
| il-8 | il-8 | coding | upstream | 94676 | 45085269 ~ 45087130 (-) |
| LOC110486532 | LOC106607051 | coding | upstream | 142436 | 45133029 ~ 45135645 (-) |
| LOC110486530 | LOC106601319 | coding | upstream | 146163 | 45136756 ~ 45143108 (-) |
| ankrd54 | LOC106607054 | coding | upstream | 152735 | 45143328 ~ 45145991 (-) |
| G1178946 | LOC106607042 | non-coding | downstream | 27086 | 44946191 ~ 44961883 (-) |
| G1178942 | LOC106607040 | non-coding | downstream | 44814 | 44941019 ~ 44944155 (-) |
| G1178924 | NA | non-coding | downstream | 70352 | 44918392 ~ 44918617 (-) |
| G1178919 | NA | non-coding | downstream | 77400 | 44911225 ~ 44911569 (-) |
| G1178913 | NA | non-coding | downstream | 83437 | 44905303 ~ 44905532 (-) |
| G1178962 | NA | non-coding | upstream | 4233 | 44994826 ~ 44996003 (-) |
| G1178974 | NA | non-coding | upstream | 22192 | 45012785 ~ 45014745 (-) |
| G1178980 | LOC106601324 | non-coding | upstream | 29705 | 45020298 ~ 45021747 (-) |
| G1179064 | NA | non-coding | upstream | 155871 | 45146464 ~ 45146663 (-) |
| G1179069 | NA | non-coding | upstream | 184346 | 45174939 ~ 45175366 (-) |
| G1178958 | LOC106607010 | other | downstream | 7769 | 44969210 ~ 44981200 (-) |
| G1178765 | LOC100380669 | other | downstream | 257618 | 44725639 ~ 44731351 (-) |
| G1178763 | LOC106607027 | other | downstream | 335501 | 44653072 ~ 44653468 (-) |
| LOC110485184 | LOC106601341 | other | downstream | 443485 | 44467268 ~ 44545484 (-) |
| G1178286 | LOC106607023 | other | downstream | 458438 | 44513436 ~ 44530531 (-) |
| G1178982 | LOC106607046 | other | upstream | 35922 | 45026515 ~ 45028613 (-) |
| G1178996 | NA | other | upstream | 60983 | 45051576 ~ 45052024 (-) |
| zgc:171844 | LOC106607059 | other | upstream | 192867 | 45182660 ~ 45193315 (-) |
| G1179619 | LOC106601391 | other | upstream | 538843 | 45529436 ~ 45530114 (-) |
