G1178962


Basic Information

Item Value
gene id G1178962
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 44994826 ~ 44996003 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1344544
ATCTCACTTGTATTCTTAAATTAAACAGAGATATAATAGAACGACACACCCAGGTGCATTTCCACAGACCAAACGACATGCATTCAGGGGACTTAGAAACCACAGCGACTCCGGTCACACAGCTCCATCTCAAAGGAAACAAAACGACAAAACAAACTCACTTAAAAAGTCAGCACTCTCTCCCTGTGGTCCACGATCAATCTGCTAATCAAACCCTGTCCACCTTAAATCACTTTCAGGAGAAAACAACAAGGCAAAAAGACATACAGTCCAGCTATTCATACCAGGATTGCTTAAATAtgtaagtgtttttttttttgctatcattttttaatttttttatttgatgGTGTATTTTAATTATGGAATACATTTGTCTGACTAAAAATCATCTCATCTAGCTAAAACTAGGCCCCTCTCCACTGGCTTGTCTCCCTGCTATAGAATCTAGGTAAAACTAGGCCCCTCTCCACTGGCTTGTCTCCCTGCTATAGAATCTAGGTAAAACTAGGCCCCTCTCCACTGGCTTGTCTCCCTGCTATAGAATCTAGGTAAAACTAGGCCCCTCTCCACTGGCTTGTCTCCCTGCTATAGAATCTAGGTAAAATATATAAGTTCCAGTCGAGGGTCTCAGTGGGCCGTTGGTCCTCGCAGAACAGGAGTGGTTCAGTTCAGTTCTCCTCACTGCCGCTGGCCGAACCCGCctcctcctgttcctcctcgcTGTCGTCGTCGCTCACTACAGGTTTGGCCCGGGAGCCACGGCCCCTCCGGCGCTGGCCCTTCCCTCtgccctccttctccttcctccccaGCTTAATCT
>TU1344546
ATCTCACTTGTATTCTTAAATTAAACAGAGATATAATAGAACGACACACCCAGGTGCATTTCCACAGACCAAACGACATGCATTCAGGGGACTTAGAAACCACAGCGACTCCGGTCACACAGCTCCATCTCAAAGGAAACAAAACGACAAAACAAACTCACTTAAAAAGTCAGCACTCTCTCCCTGTGGTCCACGATCAATCTGCTAATCAAACCCTGTCCACCTTAAATCACTTTCAGGAGAAAACAACAAGGCAAAAAGACATACAGTCCAGCTATTCATACCAGGATTGCTTAAATAtgtaagtgtttttttttttgctatcattttttaatttttttatttgatgGTGTATTTTAATTATGGAATACATTTGTCTGACTAAAAATCATCTCATCTAGCTAAAACTAGGCCCCTCTCCACTGGCTTGTCTCCCTGCTATAGAATCTAGGTAAAATATATAAGTTCCAGTCGAGGGTCTCAGTGGGCCGTTGGTCCTCGCAGAACAGGAGTGGTTCAGTTCAGTTCTCCTCACTGCCGCTGGCCGAACCCGCCTGAAA
>TU1344547
ATCTCACTTGTATTCTTAAATTAAACAGAGATATAATAGAACGACACACCCAGGTGCATTTCCACAGACCAAACGACATGCATTCAGGGGACTTAGAAACCACAGCGACTCCGGTCACACAGCTCCATCTCAAAGGAAACAAAACGACAAAACAAACTCACTTAAAAAGTCAGCACTCTCTCCCTGTGGTCCACGATCAATCTGCTAATCAAACCCTGTCCACCTTAAATCACTTTCAGGAGAAAACAACAAGGCAAAAAGACATACAGTCCAGCTATTCATACCAGGATTGCTTAAATAtgtaagtgtttttttttttgctatcattttttaatttttttatttgatgGTGTATTTTAATTATGGAATACATTTGTCTGACTAAAAATCATCTCATCTAGCTAAAACTAGGCCCCTCTCCACTGGCTTGTCTCCCTGCTATAGAATCTAGGTAAAACTAGGCCCCTCTCCACTGGCTTGTCTCCCTGCTATAGAATCTAGGTAAAATATATAAGTTCCAGTCGAGGGTCTCAGTGGGCCGTTGGTCCTCGCAGAACAGGAGTGGTTCAGTTCAGTTCTCCTCACTGCCGCTGGCCGAACCCGCCTGAAA
>TU1344548
ATCTCACTTGTATTCTTAAATTAAACAGAGATATAATAGAACGACACACCCAGGTGCATTTCCACAGACCAAACGACATGCATTCAGGGGACTTAGAAACCACAGCGACTCCGGTCACACAGCTCCATCTCAAAGGAAACAAAACGACAAAACAAACTCACTTAAAAAGTCAGCACTCTCTCCCTGTGGTCCACGATCAATCTGCTAATCAAACCCTGTCCACCTTAAATCACTTTCAGGAGAAAACAACAAGGCAAAAAGACATACAGTCCAGCTATTCATACCAGGATTGCTTAAATAtgtaagtgtttttttttttgctatcattttttaatttttttatttgatgGTGTATTTTAATTATGGAATACATTTGTCTGACTAAAAATCATCTCATCTAGCTAAAACTAGGCCCCTCTCCACTGGCTTGTCTCCCTGCTATAGAATCTAGGTAAAACTAGGCCCCTCTCCACTGGCTTGTCTCCCTGCTATAGAATCTAGGTAAAATATATAAGTTCCAGTCGAGGGTCTCAGTGGGCCGTTGGTCCTCGCAGAACAGGAGTGGTTCAGTTCAGTTCTCCTCACTGCCGCTGGCCGAACCCGCCTGAAA
>TU1344550
ATCTCACTTGTATTCTTAAATTAAACAGAGATATAATAGAACGACACACCCAGGTGCATTTCCACAGACCAAACGACATGCATTCAGGGGACTTAGAAACCACAGCGACTCCGGTCACACAGCTCCATCTCAAAGGAAACAAAACGACAAAACAAACTCACTTAAAAAGTCAGCACTCTCTCCCTGTGGTCCACGATCAATCTGCTAATCAAACCCTGTCCACCTTAAATCACTTTCAGGAGAAAACAACAAGGCAAAAAGACATACAGTCCAGCTATTCATACCAGGATTGCTTAAATAtgtaagtgtttttttttttgctatcattttttaatttttttatttgatgGTGTATTTTAATTATGGAATACATTTGTCTGACTAAAAATCATCTCATCTAGCTAAAACTAGGCCCCTCTCCACTGGCTTGTCTCCCTGCTATAGAATCTAGGTAAAACTAGGCCCCTCTCCACTGGCTTGTCTCCCTGCTATAGAATCTAGGTAAAACTAGGCCCCTCTCCACTGGCTTGTCTCCCTGCTATAGAATCTAGGTAAAACTAGGCCCCTCTCCACTGGCTTGTCTCCCTGCTATAGAATCTAGGTAAAATATATAAGTTCCAGTCGAGGGTCTCAGTGGGCCGTTGGTCCTCGCAGAACAGGAGTGGTTCAGTTCAGTTCTCCTCACTGCCGCTGGCCGAACCCGCCTGAAA
>TU1344551
ATCTCACTTGTATTCTTAAATTAAACAGAGATATAATAGAACGACACACCCAGGTGCATTTCCACAGACCAAACGACATGCATTCAGGGGACTTAGAAACCACAGCGACTCCGGTCACACAGCTCCATCTCAAAGGAAACAAAACGACAAAACAAACTCACTTAAAAAGTCAGCACTCTCTCCCTGTGGTCCACGATCAATCTGCTAATCAAACCCTGTCCACCTTAAATCACTTTCAGGAGAAAACAACAAGGCAAAAAGACATACAGTCCAGCTATTCATACCAGGATTGCTTAAATAtgtaagtgtttttttttttgctatcattttttaatttttttatttgatgGTGTATTTTAATTATGGAATACATTTGTCTGACTAAAAATCATCTCATCTAGCTAAAACTAGGCCCCTCTCCACTGGCTTGTCTCCCTGCTATAGAATCTAGGTAAAACTAGGCCCCTCTCCACTGGCTTGTCTCCCTGCTATAGAATCTAGGTAAAACTAGGCCCCTCTCCACTGGCTTGTCTCCCTGCTATAGAATCTAGGTAAAACTAGGCCCCTCTCCACTGGCTTGTCTCCCTGCTATAGAATCTAGGTAAAATATATAAGTTCCAGTCGAGGGTCTCAGTGGGCCGTTGGTCCTCGCAGAACAGGAGTGGTTCAGTTCAGTTCTCCTCACTGCCGCTGGCCGAACCCGCCTGAAA
>TU1344552
ATCTCACTTGTATTCTTAAATTAAACAGAGATATAATAGAACGACACACCCAGGTGCATTTCCACAGACCAAACGACATGCATTCAGGGGACTTAGAAACCACAGCGACTCCGGTCACACAGCTCCATCTCAAAGGAAACAAAACGACAAAACAAACTCACTTAAAAAGTCAGCACTCTCTCCCTGTGGTCCACGATCAATCTGCTAATCAAACCCTGTCCACCTTAAATCACTTTCAGGAGAAAACAACAAGGCAAAAAGACATACAGTCCAGCTATTCATACCAGGATTGCTTAAATAtgtaagtgtttttttttttgctatcattttttaatttttttatttgatgGTGTATTTTAATTATGGAATACATTTGTCTGACTAAAAATCATCTCATCTAGCTAAAACTAGGCCCCTCTCCACTGGCTTGTCTCCCTGCTATAGAATCTAGGTAAAACTAGGCCCCTCTCCACTGGCTTGTCTCCCTGCTATAGAATCTAGGTAAAACTAGGCCCCTCTCCACTGGCTTGTCTCCCTGCTATAGAATCTAGGTAAAATATATAAGTTCCAGTCGAGGGTCTCAGTGGGCCGTTGGTCCTCGCAGAACAGGAGTGGTTCAGTTCAGTTCTCCTCACTGCCGCTGGCCGAACCCGCCTGAAA
>TU1344553
ATCTCACTTGTATTCTTAAATTAAACAGAGATATAATAGAACGACACACCCAGGTGCATTTCCACAGACCAAACGACATGCATTCAGGGGACTTAGAAACCACAGCGACTCCGGTCACACAGCTCCATCTCAAAGGAAACAAAACGACAAAACAAACTCACTTAAAAAGTCAGCACTCTCTCCCTGTGGTCCACGATCAATCTGCTAATCAAACCCTGTCCACCTTAAATCACTTTCAGGAGAAAACAACAAGGCAAAAAGACATACAGTCCAGCTATTCATACCAGGATTGCTTAAATAtgtaagtgtttttttttttgctatcattttttaatttttttatttgatgGTGTATTTTAATTATGGAATACATTTGTCTGACTAAAAATCATCTCATCTAGCTAAAACTAGGCCCCTCTCCACTGGCTTGTCTCCCTGCTATAGAATCTAGGTAAAACTAGGCCCCTCTCCACTGGCTTGTCTCCCTGCTATAGAATCTAGGTAAAACTAGGCCCCTCTCCACTGGCTTGTCTCCCTGCTATAGAATCTAGGTAAAATATATAAGTTCCAGTCGAGGGTCTCAGTGGGCCGTTGGTCCTCGCAGAACAGGAGTGGTTCAGTTCAGTTCTCCTCACTGCCGCTGGCCGAACCCGCCTGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1344544 False 823 lncRNA 0.46 3 44994826 44996003
TU1344546 False 560 lncRNA 0.41 2 44995244 44996003
TU1344547 False 610 lncRNA 0.42 2 44995244 44996003
TU1344548 False 610 lncRNA 0.42 2 44995244 44996003
TU1344550 False 710 lncRNA 0.43 2 44995244 44996003
TU1344551 False 710 lncRNA 0.43 2 44995244 44996003
TU1344552 False 660 lncRNA 0.42 3 44995244 44996003
TU1344553 True 660 lncRNA 0.42 2 44995244 44996003

Neighbor

gene id symbol gene type direction distance location
LOC110486524 LOC106607044 coding downstream 35166 44955574 ~ 44959660 (-)
LOC110486521 rbp coding downstream 130600 44856937 ~ 44864226 (-)
tdx tdx coding downstream 142153 44850578 ~ 44852940 (-)
hook2 LOC106607036 coding downstream 191599 44786935 ~ 44803227 (-)
LOC110486518 LOC106601332 coding downstream 220192 44772602 ~ 44774634 (-)
LOC110486528 LOC106607047 coding upstream 33761 45029764 ~ 45034405 (-)
il-8 il-8 coding upstream 89266 45085269 ~ 45087130 (-)
LOC110486532 LOC106607051 coding upstream 137026 45133029 ~ 45135645 (-)
LOC110486530 LOC106601319 coding upstream 140753 45136756 ~ 45143108 (-)
ankrd54 LOC106607054 coding upstream 147325 45143328 ~ 45145991 (-)
G1178959 smarca4 non-coding downstream 4233 44988969 ~ 44990593 (-)
G1178946 LOC106607042 non-coding downstream 32943 44946191 ~ 44961883 (-)
G1178942 LOC106607040 non-coding downstream 50671 44941019 ~ 44944155 (-)
G1178924 NA non-coding downstream 76209 44918392 ~ 44918617 (-)
G1178919 NA non-coding downstream 83257 44911225 ~ 44911569 (-)
G1178974 NA non-coding upstream 16782 45012785 ~ 45014745 (-)
G1178980 LOC106601324 non-coding upstream 24295 45020298 ~ 45021747 (-)
G1179064 NA non-coding upstream 150461 45146464 ~ 45146663 (-)
G1179069 NA non-coding upstream 178936 45174939 ~ 45175366 (-)
G1179074 NA non-coding upstream 183358 45179361 ~ 45179568 (-)
G1178958 LOC106607010 other downstream 13626 44969210 ~ 44981200 (-)
G1178765 LOC100380669 other downstream 263475 44725639 ~ 44731351 (-)
G1178763 LOC106607027 other downstream 341358 44653072 ~ 44653468 (-)
LOC110485184 LOC106601341 other downstream 449342 44467268 ~ 44545484 (-)
G1178982 LOC106607046 other upstream 30512 45026515 ~ 45028613 (-)
G1178996 NA other upstream 55573 45051576 ~ 45052024 (-)
zgc:171844 LOC106607059 other upstream 187457 45182660 ~ 45193315 (-)
G1179619 LOC106601391 other upstream 533433 45529436 ~ 45530114 (-)

Expression


Co-expression Network