G1178974


Basic Information

Item Value
gene id G1178974
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45012785 ~ 45014745 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1344569
ACCAATTTTTTTAATGAATATTTACAAACACATTATGAACATAATATTTACATATTCATGATCTGCACTGTTGATGTTAGTTAACACACATTTCTGGATTTATTGCATATGGCTATTGAATTAAACAATATGTTTAGTCCCAACCccacagaaaaaaaacacaacagaaacataaacaaaaactTTCACTGACTCAACAATAATGTCTTTGTTAGACTTAGGCCATATATAATTACCcaaactctctgtctgtctaatacCTGTAACACTGTGACATCCTCAAGGTCAAACACATTTAATTGTAAACAGTTAGACACATTCATTTCCCTCTGATCTCAGAGAAAGAGGTGTCAAACATTGTGGCCTAAAGCCACCTCAACACTATCATGAGTATTTGACTAAATCATCTGGTTAAAAGGTTATCAGCATGATATATAATGCACTTGGGTGGCTTCTATTCCAGTACCTAGAACTGTCATAATCAGTTTTTAcaaataaatctctctctccaGTAAACAATGCTGTGAAAACCATTAAAAGGCAACTTGTGTTTCTGAACCTGAATGAAGACATGATTtgctacactcttagaataaaGGGTTTTAAAATggttctaaatagcacccttttttctaaaagtgtagtCTGTGCACTACTGTTGCATGAACAATGAACATGGTTTAAGTCTTTCTGTCATAGAATAATTACACAATTATATACTGCTTTCACACAGTTGGGCTGAAAGAAAGGGAAGCTTGAGAAGGAGTGAATGACAGAAAGTAAGACAATGGAGAAAATGAGAAAGATACATCTCAGACAGACTGTCGTAAATCTACTGTCTTGGCTTGCAATTAAACACCATATTAGGGAAATTGAATGTTCCCACAGCAATAGTGTTAGAAATACAGTATAAGTGTCAGTGTGTTTTAACCGTCCATTTGGATAGTGCACCACTAGTGAGGCAATGTGGACGATTGATATAAAAAGACTTTGACTTTGTCCCTGTCTGTTGATGATACAGAGGTAAAATTGGCTCATTTATAGAATTCAAGACGACATTCACTATCAAAGGGTTTCATTTCAACAGGTGGCTCAGGTGTTATCAGATATCAGATTTGGATATTAAAACAATTCAGGAACAAAGAAATGAGTCTAGACATAGTAAAAGATATGATCCGCTCATTATTTCTCAACATTTTGTCAGTCTCAGAAATAAGTCAAATAAATACCTACGTTATTTACAATACCTCATTTCTGAATTCTAATTCTAGAGCGATTTTTCTCAATTGTAAGTGGTGTTAAATAAAGTTGCAGTCACCTCATATCAAGGGCACTTcttcacaaacacaaaacacTCAAATATTACAATTACATTACTGTTCTTTCATAATGGGGTTCAGCGTCTGAACAGTCTTGCATTTGTTAAACAATTCACAGTTCAGACAAATCGTCTGAGAAAAATACTACGGTGTAGAATTGGCCAATAAAACTCCAGCTTGGTGGAGATGAGTTGGTGGTCTCTTATGGCTCTGGATTGTACACAAATGGGCAAGAAAGACACATGACTGAGAAATCTTcctccttttctttctttctttgtctttGAGCATACAGTGGTTTGGTCAGCGGTATGACACTTTCTCTGCCTTCTCATGTCTTTGAGGTTGTGAGGTAAAAAAAACAAGATTGTCCAGGTAGCTTATATAAAATGTCTCTCTTActcttctgctctctcctcttaaAGTGTTTGTGTTGGCAGGGAACGGCAGCACTACGGTCAAGCCTCATCATCAAGACTCACAATCTGTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1344569 True 1810 lncRNA 0.36 2 45012785 45014745

Neighbor

gene id symbol gene type direction distance location
LOC110486524 LOC106607044 coding downstream 53125 44955574 ~ 44959660 (-)
LOC110486521 rbp coding downstream 148559 44856937 ~ 44864226 (-)
tdx tdx coding downstream 160112 44850578 ~ 44852940 (-)
hook2 LOC106607036 coding downstream 209558 44786935 ~ 44803227 (-)
LOC110486518 LOC106601332 coding downstream 238151 44772602 ~ 44774634 (-)
LOC110486528 LOC106607047 coding upstream 15019 45029764 ~ 45034405 (-)
il-8 il-8 coding upstream 70524 45085269 ~ 45087130 (-)
LOC110486532 LOC106607051 coding upstream 118284 45133029 ~ 45135645 (-)
LOC110486530 LOC106601319 coding upstream 122011 45136756 ~ 45143108 (-)
ankrd54 LOC106607054 coding upstream 128583 45143328 ~ 45145991 (-)
G1178962 NA non-coding downstream 16782 44994826 ~ 44996003 (-)
G1178959 smarca4 non-coding downstream 22192 44988969 ~ 44990593 (-)
G1178946 LOC106607042 non-coding downstream 50902 44946191 ~ 44961883 (-)
G1178942 LOC106607040 non-coding downstream 68630 44941019 ~ 44944155 (-)
G1178924 NA non-coding downstream 94168 44918392 ~ 44918617 (-)
G1178980 LOC106601324 non-coding upstream 5553 45020298 ~ 45021747 (-)
G1179064 NA non-coding upstream 131719 45146464 ~ 45146663 (-)
G1179069 NA non-coding upstream 160194 45174939 ~ 45175366 (-)
G1179074 NA non-coding upstream 164616 45179361 ~ 45179568 (-)
G1179056 NA non-coding upstream 166679 45181424 ~ 45181741 (-)
G1178958 LOC106607010 other downstream 31585 44969210 ~ 44981200 (-)
G1178765 LOC100380669 other downstream 281434 44725639 ~ 44731351 (-)
G1178763 LOC106607027 other downstream 359317 44653072 ~ 44653468 (-)
LOC110485184 LOC106601341 other downstream 467301 44467268 ~ 44545484 (-)
G1178982 LOC106607046 other upstream 11770 45026515 ~ 45028613 (-)
G1178996 NA other upstream 36831 45051576 ~ 45052024 (-)
zgc:171844 LOC106607059 other upstream 168715 45182660 ~ 45193315 (-)
G1179619 LOC106601391 other upstream 514691 45529436 ~ 45530114 (-)

Expression


Co-expression Network