G1178982 (LOC106607046)


Basic Information

Item Value
gene id G1178982
gene name LOC106607046
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45026515 ~ 45028613 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1344579
tttttatttttattggtgcAATGCAGTACAGAATACTGTGTTGCATAAGCACACCTTCACATTGGACATTTATTGCATTAAAAAGGTGATCAGCACCCAACTTTTCAATACAGTAATTTCAGTAGCATATTAAAAAGCAGTGGGATTGCAATGACACCTATTGGCAGAAAATGGtctttataaaaaaaaactatGTCTATGGTGAAAGTGGATACAAATAAAAGCTAGGGTTATAGGTTACTACCCAAATAAGTATTCTAGGAAATGTGATGCTTAGAAAAACTGCTTTATTCAATATAACAAAATGTAATGCAAGTCAATGCCAACAATAAGGAATACAATCTTATTataaaacaaatgtattacaacacacaacacataaacaacagaCAATCTAACCACAGGACAAACAACTACTGGAGAGATATGGCAACTTTCCTTTGATCTCTTCTACCATTCAGTGCTGACAAAGTTCCACAGCTCATCACTGACTGAACACCGAGACCGCACAGAGGAGTCTATGTTGATTGGTGTGGCCAGGTCAGCTCCATAGTGCACTCCTCTCAGAATGTGTGGCTCCGTGTCATACTCCCACTTGATCCTGGTCACTTTGTGGTACAACTGGGCCACGTATATGGCTGATGGGATGACTTCTGTAGTGTCATCATCAACCTCCTGCTGCAGGGTCTGCAGCTCCTGCTCCGAGTCACGCAGACTCTCCAGCTCCCTCTGCAGGAATGTAGTTCTGAGTCCATGTTCTGGCTCCTTGCTGTACACTGCTGCAGCTCCTGCTCCAGACTGTCCAGCTCCCGCTCTGCCTGGCTCTTCTGCCCCTCCATGTCCAGCAGCTTCTGGCTCGCCTCATCTTCACACTGAACTACACCGTTTAACACCAGTGTGATGGTTTTCTTAATGTCCAAGTGTCGCTCAAAGAAACACTGCTGTTTTTCTCTCACTTTTCTTAATTCATCGTCAGCTTTGCTGCTTTTCAGGATTTTGACCATCGACTCTCCCGTGTCCATAACATCCTGAAGCATGGTGACACGTCTTTTGTGGAATATTTTAgtagaaataaataataaattacTTACTGCCTGTTCTAGAGCAGACTAA

Function

NR:

description
kinetochore protein Spc24-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1344579 True 1113 TUCP 0.42 5 45026515 45028613

Neighbor

gene id symbol gene type direction distance location
LOC110486524 LOC106607044 coding downstream 66855 44955574 ~ 44959660 (-)
LOC110486521 rbp coding downstream 162289 44856937 ~ 44864226 (-)
tdx tdx coding downstream 173842 44850578 ~ 44852940 (-)
hook2 LOC106607036 coding downstream 223288 44786935 ~ 44803227 (-)
LOC110486518 LOC106601332 coding downstream 251881 44772602 ~ 44774634 (-)
LOC110486528 LOC106607047 coding upstream 1151 45029764 ~ 45034405 (-)
il-8 il-8 coding upstream 56656 45085269 ~ 45087130 (-)
LOC110486532 LOC106607051 coding upstream 104416 45133029 ~ 45135645 (-)
LOC110486530 LOC106601319 coding upstream 108143 45136756 ~ 45143108 (-)
ankrd54 LOC106607054 coding upstream 114715 45143328 ~ 45145991 (-)
G1178980 LOC106601324 non-coding downstream 4768 45020298 ~ 45021747 (-)
G1178974 NA non-coding downstream 11770 45012785 ~ 45014745 (-)
G1178962 NA non-coding downstream 30512 44994826 ~ 44996003 (-)
G1178959 smarca4 non-coding downstream 35922 44988969 ~ 44990593 (-)
G1178946 LOC106607042 non-coding downstream 64632 44946191 ~ 44961883 (-)
G1179064 NA non-coding upstream 117851 45146464 ~ 45146663 (-)
G1179069 NA non-coding upstream 146326 45174939 ~ 45175366 (-)
G1179074 NA non-coding upstream 150748 45179361 ~ 45179568 (-)
G1179056 NA non-coding upstream 152811 45181424 ~ 45181741 (-)
pik3r6b NA non-coding upstream 172759 45200981 ~ 45213655 (-)
G1178958 LOC106607010 other downstream 45315 44969210 ~ 44981200 (-)
G1178765 LOC100380669 other downstream 295164 44725639 ~ 44731351 (-)
G1178763 LOC106607027 other downstream 373047 44653072 ~ 44653468 (-)
LOC110485184 LOC106601341 other downstream 481031 44467268 ~ 44545484 (-)
G1178286 LOC106607023 other downstream 495984 44513436 ~ 44530531 (-)
G1178996 NA other upstream 22963 45051576 ~ 45052024 (-)
zgc:171844 LOC106607059 other upstream 154847 45182660 ~ 45193315 (-)
G1179619 LOC106601391 other upstream 500823 45529436 ~ 45530114 (-)
G1179621 LOC106607015 other upstream 503245 45531858 ~ 45532662 (-)

Expression


Co-expression Network