G1178541



Basic Information


Item Value
gene id G1178541
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45035675 ~ 45035971 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1344060
cacacaacacaatgccacatatgtctcaagttttgagggagtgtgcaattggcatgcggactgcaggaatgtccactcgagctgttgccagagaatgttaaTTTCCCTAccgtaagccgcctccaatgttgttttagagaatttggcacaacgtccaaccggcctcacaactgcagaccatgtgtaaccatgccagcccaggattCTCCAATCcggtttcttcacctgcgggatcaactgagaccagccacccgaacagctgatgaaactgaggagtatttcagtctgtaataaagc

Function


NR:

description
hypothetical protein EH28_16446

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1344060 True 297 lncRNA 0.49 1 45035675 45035971

Neighbor


gene id symbol gene type direction distance location
LOC110486529 LOC106607046 coding upstream 7055 45026189 ~ 45028620 (+)
LOC110486527 LOC100286593 coding upstream 10082 45019307 ~ 45025593 (+)
LOC118938604 NA coding upstream 12381 45023197 ~ 45023294 (+)
LOC100135849 LOC106607045 coding upstream 20305 45001558 ~ 45015370 (+)
LOC110486526 smarca4 coding upstream 39548 44967368 ~ 44996127 (+)
zgc:162612 LOC106607050 coding downstream 75672 45111643 ~ 45115147 (+)
LOC110486534 NA coding downstream 99709 45135680 ~ 45140940 (+)
hmox1a LOC106607056 coding downstream 116111 45152082 ~ 45154732 (+)
LOC110486541 LOC106607062 coding downstream 187498 45223469 ~ 45268420 (+)
usp43b LOC106601383 coding downstream 322768 45358739 ~ 45451742 (+)
G1178536 NA non-coding upstream 17748 45017677 ~ 45017927 (+)
G1178465 NA non-coding upstream 70183 44964021 ~ 44965492 (+)
G1178457 yo84 non-coding upstream 73911 44960089 ~ 44961764 (+)
G1178511 NA non-coding upstream 120835 44914608 ~ 44914840 (+)
G1178508 NA non-coding upstream 122682 44912785 ~ 44912993 (+)
G1178549 NA non-coding downstream 8980 45044951 ~ 45045202 (+)
G1178554 NA non-coding downstream 15193 45051164 ~ 45051364 (+)
G1178555 NA non-coding downstream 30427 45066398 ~ 45101821 (+)
G1178587 il-8 non-coding downstream 49292 45085263 ~ 45087208 (+)
G1178617 NA non-coding downstream 110252 45146223 ~ 45147982 (+)
LOC110485188 LOC106601310 other upstream 109358 44878675 ~ 44943951 (+)
G1178425 NA other upstream 171492 44859869 ~ 44864183 (+)
G1178363 NA other upstream 367216 44668068 ~ 44668459 (+)
LOC110486491 LOC106607082 other upstream 830105 44174050 ~ 44211083 (+)
G1179156 NA other downstream 276359 45312330 ~ 45313033 (+)
G1179362 NA other downstream 426617 45462588 ~ 45462943 (+)
LOC110485192 LOC106601391 other downstream 493465 45529398 ~ 45554103 (+)
LOC118936304 LOC106601427 other downstream 1138057 46173911 ~ 46176562 (+)
G1180047 NA other downstream 1203173 46239144 ~ 46273601 (+)

Expression



Co-expression Network