G1178549


Basic Information

Item Value
gene id G1178549
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45044951 ~ 45045202 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1344068
acatagtcaaagctttccttaagtttgggtcagtcacagtggtcaggtattctgtcactgtgtactctctgtttagggccaaatagcattctagtttgctctgtttttttgttaattctttccaatgtgtcaagtaattctgctctgcatgcatgaaTAACAATGACacatggtttgatgaagaatgcaaaaatctaagaaagaaattgagaaacctgtccaaccaaaaacatagagacccggaaaacctgc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1344068 True 252 lncRNA 0.38 1 45044951 45045202

Neighbor

gene id symbol gene type direction distance location
LOC110486529 LOC106607046 coding upstream 16331 45026189 ~ 45028620 (+)
LOC110486527 LOC100286593 coding upstream 19358 45019307 ~ 45025593 (+)
LOC118938604 NA coding upstream 21657 45023197 ~ 45023294 (+)
LOC100135849 LOC106607045 coding upstream 29581 45001558 ~ 45015370 (+)
LOC110486526 smarca4 coding upstream 48824 44967368 ~ 44996127 (+)
zgc:162612 LOC106607050 coding downstream 66441 45111643 ~ 45115147 (+)
LOC110486534 NA coding downstream 90478 45135680 ~ 45140940 (+)
hmox1a LOC106607056 coding downstream 106880 45152082 ~ 45154732 (+)
LOC110486541 LOC106607062 coding downstream 178267 45223469 ~ 45268420 (+)
usp43b LOC106601383 coding downstream 313537 45358739 ~ 45451742 (+)
G1178541 NA non-coding upstream 8980 45035675 ~ 45035971 (+)
G1178536 NA non-coding upstream 27024 45017677 ~ 45017927 (+)
G1178465 NA non-coding upstream 79459 44964021 ~ 44965492 (+)
G1178457 yo84 non-coding upstream 83187 44960089 ~ 44961764 (+)
G1178511 NA non-coding upstream 130111 44914608 ~ 44914840 (+)
G1178554 NA non-coding downstream 5962 45051164 ~ 45051364 (+)
G1178555 NA non-coding downstream 21196 45066398 ~ 45101821 (+)
G1178587 il-8 non-coding downstream 40061 45085263 ~ 45087208 (+)
G1178617 NA non-coding downstream 101021 45146223 ~ 45147982 (+)
G1178630 NA non-coding downstream 120848 45166050 ~ 45166423 (+)
LOC110485188 LOC106601310 other upstream 118634 44878675 ~ 44943951 (+)
G1178425 NA other upstream 180768 44859869 ~ 44864183 (+)
G1178363 NA other upstream 376492 44668068 ~ 44668459 (+)
LOC110486491 LOC106607082 other upstream 839381 44174050 ~ 44211083 (+)
G1179156 NA other downstream 267128 45312330 ~ 45313033 (+)
G1179362 NA other downstream 417386 45462588 ~ 45462943 (+)
LOC110485192 LOC106601391 other downstream 484234 45529398 ~ 45554103 (+)
LOC118936304 LOC106601427 other downstream 1128826 46173911 ~ 46176562 (+)
G1180047 NA other downstream 1193942 46239144 ~ 46273601 (+)

Expression


Co-expression Network