G1178587 (il-8)


Basic Information

Item Value
gene id G1178587
gene name il-8
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45085263 ~ 45087208 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1344112
CAGAGGTTTTTTTTCACGCATTTATTGTAATTGAATTAGATTGGAAGTTTCAACATGATCCAACAGTTTAATTTGAATAAATAGGCAAATAAATATATCAATAAATATACTGAGGTTTGTATTACGAAATCATTCCAATACAACCGGAATGCATGTAAATCTCATAATTTGATTATAACAATGAAAGAAAAACAATttataaattaaaataaaatataagtTTAGTACATAGTACTTGGTTGTATATAAGAAACCGACTGTCTTTTCACTTAAAACAGTCTCATGCCACTCTAAATCTAATGTTGTATTCCAACCTGGATAGAACATGATAGAATTCAGCCTATCAAGCTTATAAATACTTATTTGGTTTGTATCTTGAGAATTCATGGAATGATGACCCATGGAATGATGACCCATGGAATGATGACCCATGGAATGATGACCCATGGAATGATGACCCATGGAATGATGACCCCTCTTCATTTGTTGTTGGCCAGCATCTTCTCAATGACCCTCTTGACCCACGGAGCGCTGACATCCAGACAAATCTCCTGACCGCTCTTGCTCAGAGTGGCAatgatctcagtgtctCTGCAGTGCGAGCTGGGAGGGAACATCTCCACCTTCTTAATGAGTTTACCAATTCGTCTGCTTTCCGTCTCAATGCAGCGACATCGCAGGTCAGCCCCCATGCCTCTCAGACTCATCCCCTCAGTAATGGTCAGGAGGGCCAGGAGCACAACGACAAGGCTGGCTGACATTCTGATGCTCATCTTGGGGTTACAGATGATCCTACTAGAAATCCTCTAATAAAGTCTACGGTTGTTATCTAGCTGGTAACAGGTATTGTAAAGTATTTTATTgttatatctttctctctttgtcagtCTAGTTGCGagttctttctttccttccttctctgtCTGTGGAGAGTTTGAATCTGCCGCTGTGAGAAGAGAACCGCTTTGTCTGCCACTGTGGGGAGAGAGCTGTTTTAAAGCCGAGTCCTGGAAGTGAGTCATTGTGGCATGTGAAAGATTGTGAAATCGGGGATTTGGCTGACTT

Function

NR:

description
putative cxc chemokine precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1344112 True 1065 lncRNA 0.40 4 45085263 45087208

Neighbor

gene id symbol gene type direction distance location
LOC110486529 LOC106607046 coding upstream 56643 45026189 ~ 45028620 (+)
LOC110486527 LOC100286593 coding upstream 59670 45019307 ~ 45025593 (+)
LOC118938604 NA coding upstream 61969 45023197 ~ 45023294 (+)
LOC100135849 LOC106607045 coding upstream 69893 45001558 ~ 45015370 (+)
LOC110486526 smarca4 coding upstream 89136 44967368 ~ 44996127 (+)
zgc:162612 LOC106607050 coding downstream 24435 45111643 ~ 45115147 (+)
LOC110486534 NA coding downstream 48472 45135680 ~ 45140940 (+)
hmox1a LOC106607056 coding downstream 64874 45152082 ~ 45154732 (+)
LOC110486541 LOC106607062 coding downstream 136261 45223469 ~ 45268420 (+)
usp43b LOC106601383 coding downstream 271531 45358739 ~ 45451742 (+)
G1178554 NA non-coding upstream 33899 45051164 ~ 45051364 (+)
G1178549 NA non-coding upstream 40061 45044951 ~ 45045202 (+)
G1178541 NA non-coding upstream 49292 45035675 ~ 45035971 (+)
G1178536 NA non-coding upstream 67336 45017677 ~ 45017927 (+)
G1178465 NA non-coding upstream 119771 44964021 ~ 44965492 (+)
G1178617 NA non-coding downstream 59015 45146223 ~ 45147982 (+)
G1178630 NA non-coding downstream 78842 45166050 ~ 45166423 (+)
G1178631 NA non-coding downstream 80068 45167276 ~ 45168172 (+)
G1178655 NA non-coding downstream 106797 45194005 ~ 45194242 (+)
G1178658 NA non-coding downstream 113017 45200225 ~ 45201070 (+)
LOC110485188 LOC106601310 other upstream 158946 44878675 ~ 44943951 (+)
G1178425 NA other upstream 221080 44859869 ~ 44864183 (+)
G1178363 NA other upstream 416804 44668068 ~ 44668459 (+)
LOC110486491 LOC106607082 other upstream 879693 44174050 ~ 44211083 (+)
G1179156 NA other downstream 225122 45312330 ~ 45313033 (+)
G1179362 NA other downstream 375380 45462588 ~ 45462943 (+)
LOC110485192 LOC106601391 other downstream 442228 45529398 ~ 45554103 (+)
LOC118936304 LOC106601427 other downstream 1086820 46173911 ~ 46176562 (+)
G1180047 NA other downstream 1151936 46239144 ~ 46273601 (+)

Expression


Co-expression Network