G1178617


Basic Information

Item Value
gene id G1178617
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45146223 ~ 45147982 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1344147
TTGAAAACAGATACAATTTAGTGTGAAGAAATTCAAGAAATATGATTTGCCATGTAATACTACAAAAACATGGAAACATCTGAGCATTATGTTCTCTCTCTTTAATGTCTTACATCTGTTGCAACAGAAAATTAAGTAAGCAGATAAATAACAGTAGTAGGCCTACACAAatagtataaaaaaataaataatgcatAATTCATAGATCACAATGCAATTAAAACCCAACATCACCCATACTGTTTGTACACACATTCAAATCTAAAGTTACATCATATAAAACATGCCACAATTTAGTGTAATATATAAATATGATTTAAGGAATAAAATGGGATAAGCAGTCAACTCTCAAGAGGAATCAGGATGGTTGTTCAACCAACATATTTGGAATATACAGtcaaagtttgaacacacctactcattcaagggtttttctttatttttactattttctacattgtacaataatagtgaagacatcaagactatgaaataacacatacggagtcatgtagtaaccaaaagtgttataaatataaaaacatattttagattcttcaaagtagccaccctttgccttgatgacagctttgcacactctgggcattctctcaaccagcttcatgaggtcacctggaatgcttttccaacagtcttgaaggagttaacACATAttctgagtacttgttggctgcttttccttcactctccggtctaactcatcccaaaccatctcaattgggttgaggtcggctgattgtggaggccaggtcatcttatgcagcactccatcactctccttcttggtcaaatagcccttacacagcctggaggtgtgtttttggttattgtcctgttgaaaaacaaataatagtcccactaagtgcaaaccagatgggatggtgtattgctgcagaatgctgtggtagccatgctggttacgtgtgccttgaattcaaaataaatcactgacagtgtcaccagcaaagcacgcccacaccatcatacctcctcctccatgcttcatggtgggaaacacacatgcggagatcatccgttcacctactctgcgtctcacaaagacaaggcagttggaaccaaaaatctccaatttggactcatcagaccaaaggacagatttccaccagtctaacgtccattgctcgtgtttcttggtccaagcaagtctcctcttcctattggtcctttagtagtggtttctttgcagcaattcgacaatggcctgattcacgcagtctcctctgaacagttgatgttgagatgtgtctgttacttgaactctgcgaagcatttacttgggctgcaatctgaagtgcagttaattgccgatttctgaggatggtaaatctaattaacttatcctctgcagcagagttcagaggtaactctgggtcttccttccctgtggcggtcctcatgagagtcagtttcatcatagctcttggtttttgcgactgcacttcaagAAACTTTCAGAGTTCTTGatatgttccatattgactgaccttcatgtcttaaagtaatgatggactgtcatttgctTATTTtacctgttcttgccataatatggacttggtcttttaccaaatagggctatttctataccaaccctaccttgtcacaacacaactgattgactaaAATGCATTAagcaaagaaattccacaaattaactttttgaaatgcattccagaagctggttgagagaatgccaagagtgtgcaaagctgtcatcaagg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1344147 True 1760 lncRNA 0.39 1 45146223 45147982

Neighbor

gene id symbol gene type direction distance location
LOC110486534 NA coding upstream 5283 45135680 ~ 45140940 (+)
zgc:162612 LOC106607050 coding upstream 31076 45111643 ~ 45115147 (+)
LOC110486529 LOC106607046 coding upstream 117603 45026189 ~ 45028620 (+)
LOC110486527 LOC100286593 coding upstream 120630 45019307 ~ 45025593 (+)
LOC118938604 NA coding upstream 122929 45023197 ~ 45023294 (+)
hmox1a LOC106607056 coding downstream 4100 45152082 ~ 45154732 (+)
LOC110486541 LOC106607062 coding downstream 75487 45223469 ~ 45268420 (+)
usp43b LOC106601383 coding downstream 210757 45358739 ~ 45451742 (+)
LOC110486545 grb2 coding downstream 336816 45484798 ~ 45524322 (+)
trnas-aga-61 NA coding downstream 378823 45526805 ~ 45526886 (+)
G1178555 NA non-coding upstream 44402 45066398 ~ 45101821 (+)
G1178587 il-8 non-coding upstream 59015 45085263 ~ 45087208 (+)
G1178554 NA non-coding upstream 94859 45051164 ~ 45051364 (+)
G1178549 NA non-coding upstream 101021 45044951 ~ 45045202 (+)
G1178541 NA non-coding upstream 110252 45035675 ~ 45035971 (+)
G1178630 NA non-coding downstream 18068 45166050 ~ 45166423 (+)
G1178631 NA non-coding downstream 19294 45167276 ~ 45168172 (+)
G1178655 NA non-coding downstream 46023 45194005 ~ 45194242 (+)
G1178658 NA non-coding downstream 52243 45200225 ~ 45201070 (+)
LOC110486526 smarca4 other upstream 176504 44967368 ~ 44996127 (+)
LOC110485188 LOC106601310 other upstream 219906 44878675 ~ 44943951 (+)
G1178425 NA other upstream 282040 44859869 ~ 44864183 (+)
G1178363 NA other upstream 477764 44668068 ~ 44668459 (+)
LOC110486491 LOC106607082 other upstream 940653 44174050 ~ 44211083 (+)
G1179156 NA other downstream 164348 45312330 ~ 45313033 (+)
G1179362 NA other downstream 314606 45462588 ~ 45462943 (+)
LOC110485192 LOC106601391 other downstream 381454 45529398 ~ 45554103 (+)
LOC118936304 LOC106601427 other downstream 1026046 46173911 ~ 46176562 (+)
G1180047 NA other downstream 1091162 46239144 ~ 46273601 (+)

Expression


Co-expression Network