G1178631


Basic Information

Item Value
gene id G1178631
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45167276 ~ 45168172 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1344162
agaacaagttcttgaCTGACATTGTGTAACATTTGATAAACTTCAAGTACTCCAGAAACAATTAGGTTCGTATTGCTCTTCCCAAAAGTGTTCTGTATTACAAATGGGATTCATCATGAGCATCACATAATACATTTCCCCTAATTATATTATATGGCAATCTACTAACATTGTGTTTATCATGCCTGCATTTTCTGGAATGCACACCATTCAATGTTCATCTGAAAATATTGGGCATATTCCATTCTCTTCTAAGAAACATAACAGGAATTAAACTCAATCATTGTGCAAATGTTTGTATCCGCAGCCATAccagaggctggtgggagAATGGCATTGGTTATGTGACAGGTTGCGGCTTGGCCTATTTTTCTGAGTGGTTGTTGTCGTCACGAGAAAAAGCTTTCAGGGACGGGAGTCGCTCCGCTGCTCTCACTCTTTCTGCCAGAAACCTGTCA

Function

NR:

description
target of Myb protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1344162 True 458 lncRNA 0.40 2 45167276 45168172

Neighbor

gene id symbol gene type direction distance location
hmox1a LOC106607056 coding upstream 12544 45152082 ~ 45154732 (+)
LOC110486534 NA coding upstream 26336 45135680 ~ 45140940 (+)
zgc:162612 LOC106607050 coding upstream 52129 45111643 ~ 45115147 (+)
LOC110486529 LOC106607046 coding upstream 138656 45026189 ~ 45028620 (+)
LOC118938604 NA coding upstream 143982 45023197 ~ 45023294 (+)
LOC110486541 LOC106607062 coding downstream 55297 45223469 ~ 45268420 (+)
usp43b LOC106601383 coding downstream 190567 45358739 ~ 45451742 (+)
LOC110486545 grb2 coding downstream 316626 45484798 ~ 45524322 (+)
trnas-aga-61 NA coding downstream 358633 45526805 ~ 45526886 (+)
LOC110485192 LOC106601391 coding downstream 361226 45529398 ~ 45554103 (+)
G1178630 NA non-coding upstream 853 45166050 ~ 45166423 (+)
G1178617 NA non-coding upstream 19294 45146223 ~ 45147982 (+)
G1178555 NA non-coding upstream 65455 45066398 ~ 45101821 (+)
G1178587 il-8 non-coding upstream 80068 45085263 ~ 45087208 (+)
G1178554 NA non-coding upstream 115912 45051164 ~ 45051364 (+)
G1178655 NA non-coding downstream 25833 45194005 ~ 45194242 (+)
G1178658 NA non-coding downstream 32053 45200225 ~ 45201070 (+)
G1179130 NA non-coding downstream 107236 45275408 ~ 45275638 (+)
G1179151 NA non-coding downstream 132581 45300753 ~ 45343077 (+)
LOC110486526 smarca4 other upstream 197557 44967368 ~ 44996127 (+)
LOC110485188 LOC106601310 other upstream 240959 44878675 ~ 44943951 (+)
G1178425 NA other upstream 303093 44859869 ~ 44864183 (+)
G1178363 NA other upstream 498817 44668068 ~ 44668459 (+)
LOC110486491 LOC106607082 other upstream 961706 44174050 ~ 44211083 (+)
G1179156 NA other downstream 144158 45312330 ~ 45313033 (+)
G1179362 NA other downstream 294416 45462588 ~ 45462943 (+)
LOC118936304 LOC106601427 other downstream 1005856 46173911 ~ 46176562 (+)
G1180047 NA other downstream 1070972 46239144 ~ 46273601 (+)

Expression


Co-expression Network