G1178655


Basic Information

Item Value
gene id G1178655
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45194005 ~ 45194242 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1344188
gtcatgagtcatgacagaCAAGGCCAAATACAAAGATTCAAGAGGAGTTCCACATACTGCTGACCTTTGCTTTGTTACATTAAGAGGCGTATTGATATTGACACAAGAGGCATTGGGTTTCCTGCTTGTGTTCTTCAAAAACACTACAAGACATTTTCTGATGTTTGACACTATGCTGTTGTGAGGTATTGACATATACTGTCCACTGCATTGACTTACAATGTATCAATAAATATAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1344188 True 238 lncRNA 0.38 1 45194005 45194242

Neighbor

gene id symbol gene type direction distance location
hmox1a LOC106607056 coding upstream 39273 45152082 ~ 45154732 (+)
LOC110486534 NA coding upstream 53065 45135680 ~ 45140940 (+)
zgc:162612 LOC106607050 coding upstream 78858 45111643 ~ 45115147 (+)
LOC110486529 LOC106607046 coding upstream 165385 45026189 ~ 45028620 (+)
LOC118938604 NA coding upstream 170711 45023197 ~ 45023294 (+)
LOC110486541 LOC106607062 coding downstream 29227 45223469 ~ 45268420 (+)
usp43b LOC106601383 coding downstream 164497 45358739 ~ 45451742 (+)
LOC110486545 grb2 coding downstream 290556 45484798 ~ 45524322 (+)
trnas-aga-61 NA coding downstream 332563 45526805 ~ 45526886 (+)
LOC110485192 LOC106601391 coding downstream 335156 45529398 ~ 45554103 (+)
G1178631 NA non-coding upstream 25833 45167276 ~ 45168172 (+)
G1178630 NA non-coding upstream 27582 45166050 ~ 45166423 (+)
G1178617 NA non-coding upstream 46023 45146223 ~ 45147982 (+)
G1178555 NA non-coding upstream 92184 45066398 ~ 45101821 (+)
G1178587 il-8 non-coding upstream 106797 45085263 ~ 45087208 (+)
G1178658 NA non-coding downstream 5983 45200225 ~ 45201070 (+)
G1179130 NA non-coding downstream 81166 45275408 ~ 45275638 (+)
G1179151 NA non-coding downstream 106511 45300753 ~ 45343077 (+)
G1179178 NA non-coding downstream 158216 45352458 ~ 45352905 (+)
LOC110486526 smarca4 other upstream 224286 44967368 ~ 44996127 (+)
LOC110485188 LOC106601310 other upstream 267688 44878675 ~ 44943951 (+)
G1178425 NA other upstream 329822 44859869 ~ 44864183 (+)
G1178363 NA other upstream 525546 44668068 ~ 44668459 (+)
LOC110486491 LOC106607082 other upstream 988435 44174050 ~ 44211083 (+)
G1179156 NA other downstream 118088 45312330 ~ 45313033 (+)
G1179362 NA other downstream 268346 45462588 ~ 45462943 (+)
LOC118936304 LOC106601427 other downstream 979786 46173911 ~ 46176562 (+)
G1180047 NA other downstream 1044902 46239144 ~ 46273601 (+)

Expression


Co-expression Network