G1178658


Basic Information

Item Value
gene id G1178658
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45200225 ~ 45201070 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1344191
aatgccaacaatgaacagtgagccatcatattcatgcataaaaaataaaaaataatgaaaagcattggaagtttgaattttgtaaagttagtgtgggggAGGTGGGGAAATAATttttatcgatcaataatgaccaACCTCCTGGCaatgacaacttagatggaaagctactgaggatgctagctgactctatagccactttCATcactttaatctgagcctagaggaaattCTTTGTcctcaggcttggagggaagccAAGGTCATTCAgatacccaagagtggtaaagttgcctttactggttctaacagcaaaCTTATAAACTTGCtaccagctcttagcaaactgttgggggAAAAATGGGTttaaccaaatacaatgctatttctctgtaaacaaattaacaacagacaagcagcatgcttatagagaagggcactcaacatgcactgcactgacacaaattacagatgattggttgaaagaaatgaataagaagattgtgggagctgtactgttagatttcagtgcagcctttgatattattgaccataacctgttgttgaaaaaaaacatatgtgttatggcttttcaacctctgccatattgtggattcagagctatctatctaatataactcaaaggggtttctttaatggaagcttctctaatgtcaaatcTGTAAAAGTGTgttgtaccgcagggcagctctctaggccctccactcttttctatttttaccaatgacctgccactggcattaagcaaagcatgtgtgtccatgctgatgattcaaccatatacacatcagcaaccacagctaatgaagtcactgaaaccctaaa

Function

NR:

description
PREDICTED: DNA-directed RNA polymerase II subunit RPB1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1344191 True 846 lncRNA 0.39 1 45200225 45201070

Neighbor

gene id symbol gene type direction distance location
hmox1a LOC106607056 coding upstream 45493 45152082 ~ 45154732 (+)
LOC110486534 NA coding upstream 59285 45135680 ~ 45140940 (+)
zgc:162612 LOC106607050 coding upstream 85078 45111643 ~ 45115147 (+)
LOC110486529 LOC106607046 coding upstream 171605 45026189 ~ 45028620 (+)
LOC118938604 NA coding upstream 176931 45023197 ~ 45023294 (+)
LOC110486541 LOC106607062 coding downstream 22399 45223469 ~ 45268420 (+)
usp43b LOC106601383 coding downstream 157669 45358739 ~ 45451742 (+)
LOC110486545 grb2 coding downstream 283728 45484798 ~ 45524322 (+)
trnas-aga-61 NA coding downstream 325735 45526805 ~ 45526886 (+)
LOC110485192 LOC106601391 coding downstream 328328 45529398 ~ 45554103 (+)
G1178655 NA non-coding upstream 5983 45194005 ~ 45194242 (+)
G1178631 NA non-coding upstream 32053 45167276 ~ 45168172 (+)
G1178630 NA non-coding upstream 33802 45166050 ~ 45166423 (+)
G1178617 NA non-coding upstream 52243 45146223 ~ 45147982 (+)
G1178555 NA non-coding upstream 98404 45066398 ~ 45101821 (+)
G1179130 NA non-coding downstream 74338 45275408 ~ 45275638 (+)
G1179151 NA non-coding downstream 99683 45300753 ~ 45343077 (+)
G1179178 NA non-coding downstream 151388 45352458 ~ 45352905 (+)
G1179259 NA non-coding downstream 216930 45418000 ~ 45426391 (+)
LOC110486526 smarca4 other upstream 230506 44967368 ~ 44996127 (+)
LOC110485188 LOC106601310 other upstream 273908 44878675 ~ 44943951 (+)
G1178425 NA other upstream 336042 44859869 ~ 44864183 (+)
G1178363 NA other upstream 531766 44668068 ~ 44668459 (+)
LOC110486491 LOC106607082 other upstream 994655 44174050 ~ 44211083 (+)
G1179156 NA other downstream 111260 45312330 ~ 45313033 (+)
G1179362 NA other downstream 261518 45462588 ~ 45462943 (+)
LOC118936304 LOC106601427 other downstream 972958 46173911 ~ 46176562 (+)
G1180047 NA other downstream 1038074 46239144 ~ 46273601 (+)

Expression


Co-expression Network