G1179106



Basic Information


Item Value
gene id G1179106
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45267333 ~ 45268407 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1344709
CTTTATTTCAGATTTACTAGGCTGTTCAATAGCTACAGTCTTTTACTTTTTCATTACAGCCGTCTATTATCCAAAGCAAAGAGTGACCAAAAATAAAAACAGGCAAAAACAAAAGCCACATGGTTTCATGTGTCATTAAATATATTCATTTGTGATCAACATAATATATTAGTATGCATTACAGGACATTACACAGACTTTTGCAATGGACAAAGCTAAACAACATTTACAAGCCCAAGTATGAACACAAGCAACATTCAGATACATTTTTTGTAGCAGATATCTGGTCATGACTGAGTACCATTCTCCAAATGTGTGGAAAACTGGTCTAACTTTACACACTGACAGCTTTGATATGTGAAGAACCAGAGATGGATGCACTGGCACAAGAACATTTGAAATGGATTGCAATAAAAATTTCCATccaaatctgtttttttttaagtgtgtgtgtatgtgtgtgtgtatgtgtgtgagcagGTGTGCATCTGCTTGCAtttatgtgtgtttatgcatTTCCCAAATATGTTTGGGACTGTTTATTACAGGTTGTAGATAAGCCTCTCTCTGCTGAAATACACTCCTGGGTATGCATAACTTGTAAACAAGAGAAATCTGCCTCTTTCTCATTCATTTGTCTACCCATTTATTAAGCCTATGGTATTTAAAACTCTGGTTAATAACACATGGACATACATCTAGTAAATGTGTAACAAAAATAGTAACAAACTATACAGCTATATAACATTTAAACAGCCGGTCACCCCTTTTGAGTACCAAGTAACGTCTTGAAAATGGAATGTCTGCAAGGTTTGAAGTGAGAATCAGATGCTGACACAGTGTGTTGATCACACAGCTTGACTCCTGTGATATTTCATCACCCCACAGGTTTTCTTTTACAACATAATGCCTGTATCTTTATACAgcatatacatactgtacatactgtcaTCCACAATTTGGTTAGCTTAGCTAAGCTTAGCTAAGTAGTCAGCATGCATCTATTATTTTAACAAAACATAGGTTCATTTTGATAGGTCTTATCAAACTACATGAGGTGATTCACTGTTGAAGA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1344709 True 1075 lncRNA 0.35 1 45267333 45268407

Neighbor


gene id symbol gene type direction distance location
pik3r6b NA coding downstream 53678 45200981 ~ 45213655 (-)
LOC110485191 LOC106601377 coding downstream 71356 45194711 ~ 45195977 (-)
zgc:171844 LOC106607059 coding downstream 74018 45182660 ~ 45193315 (-)
tom1 LOC106607057 coding downstream 93311 45166694 ~ 45174022 (-)
gcat gcat coding downstream 101914 45159814 ~ 45165419 (-)
LOC110486542 LOC106608160 coding upstream 32326 45300733 ~ 45333032 (-)
mchr1b LOC106601409 coding upstream 212593 45481000 ~ 45484678 (-)
trnas-aga-60 NA coding upstream 258182 45526589 ~ 45526670 (-)
LOC100135782 LOC106607000 coding upstream 383489 45651896 ~ 45654777 (-)
LOC110486550 LOC106601398 coding upstream 386491 45654898 ~ 45677812 (-)
G1179056 NA non-coding downstream 85592 45181424 ~ 45181741 (-)
G1179074 NA non-coding downstream 87765 45179361 ~ 45179568 (-)
G1179069 NA non-coding downstream 91967 45174939 ~ 45175366 (-)
G1179064 NA non-coding downstream 120670 45146464 ~ 45146663 (-)
G1179119 NA non-coding upstream 637 45269044 ~ 45269384 (-)
G1179121 NA non-coding upstream 1485 45269892 ~ 45270099 (-)
G1179208 NA non-coding upstream 76808 45345215 ~ 45345426 (-)
G1179209 NA non-coding upstream 84163 45352570 ~ 45352902 (-)
G1179344 NA non-coding upstream 174830 45443237 ~ 45443576 (-)
il-8 il-8 other downstream 180203 45085269 ~ 45087130 (-)
G1178996 NA other downstream 215309 45051576 ~ 45052024 (-)
G1178982 LOC106607046 other downstream 238720 45026515 ~ 45028613 (-)
G1178958 LOC106607010 other downstream 286133 44969210 ~ 44981200 (-)
G1179619 LOC106601391 other upstream 261029 45529436 ~ 45530114 (-)
G1179621 LOC106607015 other upstream 263451 45531858 ~ 45532662 (-)
LOC110486586 ubald2 other upstream 1245050 46510585 ~ 46535713 (-)
LOC110486590 LOC105022923 other upstream 1615021 46827752 ~ 46915018 (-)
LOC110486593 LOC106606954 other upstream 2164389 47432406 ~ 47433949 (-)

Expression



Co-expression Network