G1179130


Basic Information

Item Value
gene id G1179130
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45275408 ~ 45275638 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1344735
ACACTggagtttgttctccagtgactgTACATTCATGAAAAGAACAGAGGCTAATGGCGATGAATTTGTTTGGCGACGTAATCTCGTCAGGAGGCTGCCTCGCCTGCCTCTTTTTCTCCGCCACTTCCTCCTTCGAGTCCCGGGGATTAGTGCCTGGTAAGCAGAATGTTTAGAGCTGccgactcattgaagtagaaatctccaaatcgaggttagtgacCGCTGTGCAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1344735 True 231 lncRNA 0.49 1 45275408 45275638

Neighbor

gene id symbol gene type direction distance location
LOC110486541 LOC106607062 coding upstream 6988 45223469 ~ 45268420 (+)
hmox1a LOC106607056 coding upstream 120676 45152082 ~ 45154732 (+)
LOC110486534 NA coding upstream 134468 45135680 ~ 45140940 (+)
zgc:162612 LOC106607050 coding upstream 160261 45111643 ~ 45115147 (+)
LOC110486529 LOC106607046 coding upstream 246788 45026189 ~ 45028620 (+)
usp43b LOC106601383 coding downstream 83101 45358739 ~ 45451742 (+)
LOC110486545 grb2 coding downstream 209160 45484798 ~ 45524322 (+)
trnas-aga-61 NA coding downstream 251167 45526805 ~ 45526886 (+)
LOC110485192 LOC106601391 coding downstream 253760 45529398 ~ 45554103 (+)
LOC110486547 LOC106607066 coding downstream 280180 45555818 ~ 45559601 (+)
G1178658 NA non-coding upstream 74338 45200225 ~ 45201070 (+)
G1178655 NA non-coding upstream 81166 45194005 ~ 45194242 (+)
G1178631 NA non-coding upstream 107236 45167276 ~ 45168172 (+)
G1178630 NA non-coding upstream 108985 45166050 ~ 45166423 (+)
G1179151 NA non-coding downstream 25115 45300753 ~ 45343077 (+)
G1179178 NA non-coding downstream 76820 45352458 ~ 45352905 (+)
G1179259 NA non-coding downstream 142362 45418000 ~ 45426391 (+)
G1179214 NA non-coding downstream 178321 45453959 ~ 45455862 (+)
G1179350 NA non-coding downstream 180896 45456534 ~ 45456776 (+)
LOC110486526 smarca4 other upstream 305689 44967368 ~ 44996127 (+)
LOC110485188 LOC106601310 other upstream 349091 44878675 ~ 44943951 (+)
G1178425 NA other upstream 411225 44859869 ~ 44864183 (+)
G1178363 NA other upstream 606949 44668068 ~ 44668459 (+)
LOC110486491 LOC106607082 other upstream 1069838 44174050 ~ 44211083 (+)
G1179156 NA other downstream 36692 45312330 ~ 45313033 (+)
G1179362 NA other downstream 186950 45462588 ~ 45462943 (+)
LOC118936304 LOC106601427 other downstream 898390 46173911 ~ 46176562 (+)
G1180047 NA other downstream 963506 46239144 ~ 46273601 (+)

Expression


Co-expression Network