G1179259


Basic Information

Item Value
gene id G1179259
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 45418000 ~ 45426391 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1344878
ATCCAATCCCATCCAGAAGGCTTAGTGTCTCTCAGCATTCTACCATGCTTCAACATTGCTGATTAACCCTCCCACTGTGCACCACACACTGGTGTCAGATGTCAAACTTCACAAccaatcaacgttgtttcaacataatttgtcaacgtattgtaaTGTGGACTCAACTTGGAAAAtaaattggatttgaaaaaagttatcaaccagtactgttttcatctaATTTCAACCAGAGTTGTAAACATAAAAACGTCTGTAAAACAGGAAAGGTTCACCCATTTTTAAAGTTATAGTGTTTTTGTGCATCCCTGAGTGATGTTCTATTAATTCCCATGGTcctttcatgttttcatgtgtatctgagttatTGGCGTTCAAGCAGGCAGACATCCGTCCGGTATGATGTAGCACTGTGGTAAAGTCACTCTCAGTTCtgttagtgtttaaatactggagagttgagaccaaatcacggacgctggacagagtggatttcagttgtaacaaaagacagttttaatgagtcagagatatcttgtcccgcagttttacgtgcacggacctagttcacataactcggcaaggagctaGGTGAAAAAAGAGACCTTATACaacggttacattcatttttatacatagaataaagtaggtggagtcttgtcgtttcggtcttcttgactggtcggagggttggaggcgggccttgctctagccagagcgggccccattagtgcacagcaaaagtcctttgctcttgggaccggccagttagagggagatgagatgtgtgtttatacaaggaagagggggtcagtcttatggctgggtgtatgtgttcttacgacggaatgtctttgtttatatgagctatgtgtatgaatatttatataacactaCACTGGAATAGGACTTTTAGATGGTGAAAACGTCTATCATACATGTTAGATTTCAATACTGGCCGATGTCATAACACGGGAGGATGTCTTCTCTTAAATGAGCCACTGGTTATATTTTTGCAATATTCCTACCTCGAGAAAAGTTTTATTTAACAGAGGGTCTAGCCCATTTTCCCTATTTGTCTGCCTCTTGTGTTGTAatccagggtgcattgcatggtgccGTTTCCAGAGATATGAaagaaaggaatgaaggaacgTATAACGCCCCACCCAGCAGACTGTCGACCATTCGCGTTGACGTTGTCATGCTGTGTCACACGGTTGCTAAACTAATCGCCACGCAATCCCTTCTCATATGTCGAGAAATGTGCCTATTTTCATCTAAGGCACGTAATGTCACGATTCCAAAGCTATACGATATTACAGGTAGCAAGTTAATTTTCTCACATCTCGGAAATATGTGTAATGTTGTACTTCTTGTTGACGAAATTAGTGCTAGTGTTGATTTTTTGAGCCTGCGCCCAATTGACAGGTGAAGGGTGAAGATATTCACTCCTTAAAGGAGAGCGTTCCTTGTCCCAGATCGCCCAGAATACACCGGCCTGTACCATAGACATAGCATGTGCAAcgtttcccatctcctcaaaagtataTCTGCAGTTGAGAATGTCAGACTCCACTATGTGGGGCACATCGATCTACAGGTTGAACATGCtgagattgtagactcctaaattgatagtgcagtttTTTAAGGCGAttttacagctaactagctactgcacatgctgatattggtattattgtgtgtagctatgTTTTCTTGTTtgatagctagctacctagccagccagcccataAAGAAAGCATTGCATGTGGATTTTGTAGTCGATTTGAGCTGCAACACATATCCACAACAATTTTCCATTTGTTGCCAACCTTATTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1344878 True 1846 lncRNA 0.42 2 45418000 45426391

Neighbor

gene id symbol gene type direction distance location
LOC110486541 LOC106607062 coding upstream 149580 45223469 ~ 45268420 (+)
hmox1a LOC106607056 coding upstream 263268 45152082 ~ 45154732 (+)
LOC110486534 NA coding upstream 277060 45135680 ~ 45140940 (+)
zgc:162612 LOC106607050 coding upstream 302853 45111643 ~ 45115147 (+)
LOC110486529 LOC106607046 coding upstream 389380 45026189 ~ 45028620 (+)
LOC110486545 grb2 coding downstream 58407 45484798 ~ 45524322 (+)
trnas-aga-61 NA coding downstream 100414 45526805 ~ 45526886 (+)
LOC110485192 LOC106601391 coding downstream 103007 45529398 ~ 45554103 (+)
LOC110486547 LOC106607066 coding downstream 129427 45555818 ~ 45559601 (+)
LOC110486546 LOC106601396 coding downstream 133543 45559934 ~ 45614619 (+)
G1179178 NA non-coding upstream 65095 45352458 ~ 45352905 (+)
G1179151 NA non-coding upstream 74923 45300753 ~ 45343077 (+)
G1179130 NA non-coding upstream 142362 45275408 ~ 45275638 (+)
G1178658 NA non-coding upstream 216930 45200225 ~ 45201070 (+)
G1179214 NA non-coding downstream 27568 45453959 ~ 45455862 (+)
G1179350 NA non-coding downstream 30143 45456534 ~ 45456776 (+)
G1179352 NA non-coding downstream 31216 45457607 ~ 45457815 (+)
G1179359 NA non-coding downstream 35111 45461502 ~ 45461701 (+)
G1179360 NA non-coding downstream 35662 45462053 ~ 45462305 (+)
G1179156 NA other upstream 104967 45312330 ~ 45313033 (+)
LOC110486526 smarca4 other upstream 448281 44967368 ~ 44996127 (+)
LOC110485188 LOC106601310 other upstream 491683 44878675 ~ 44943951 (+)
G1178425 NA other upstream 553817 44859869 ~ 44864183 (+)
G1178363 NA other upstream 749541 44668068 ~ 44668459 (+)
G1179362 NA other downstream 36197 45462588 ~ 45462943 (+)
LOC118936304 LOC106601427 other downstream 747637 46173911 ~ 46176562 (+)
G1180047 NA other downstream 812753 46239144 ~ 46273601 (+)
LOC110485193 LOC106601421 other downstream 905327 46302751 ~ 46336386 (+)

Expression


Co-expression Network